Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2388
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   4.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.2  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   6.9  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    25   6.9  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 128 DGEAFFYRLRVLVAYCFFRFFSYSHRDCTAYISW 27
           DG +  + L+ L ++C   F  YS  DCT+ + +
Sbjct: 726 DGTSIAHWLQGLASFCGRVFRRYSSLDCTSIVEY 759


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 356 CXSGSLWPIFLCCF*SLLCPIFLXWY 279
           C    L+P+F+ CF   L PI + W+
Sbjct: 411 CPEDRLYPLFIGCF---LLPISMFWF 433


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = +2

Query: 233 MNDSMNNXFSDDGSEDTXEEILDRVMTRSSIRRSAKANPKXKKMNRTKSKLLEQAK 400
           +N   N+  +++G +DT  E+L  ++      ++       K  N + SK  ++ K
Sbjct: 260 LNALNNSTLNENGHQDTQNEVLRDIVLEHPTAKAQDTGESNKDNNTSTSKHKKRPK 315


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 272 SEDTXEEILDRVMTRSSIRRSAKANPKXKKMNRTKSKLLEQAK 400
           S+    E +DR +     +  AKA  + KK+ + +SK  +++K
Sbjct: 23  SQRKATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQESK 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,967
Number of Sequences: 5004
Number of extensions: 16939
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)