Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2388
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512...    30   1.3  
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784...    29   1.7  
10_08_0366 - 17232010-17232061,17232546-17232601,17232692-172327...    28   4.0  
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582...    28   5.3  

>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
            21051775-21051828,21052077-21052184,21052653-21052802,
            21052914-21053258,21053361-21054801,21054844-21055675,
            21057060-21057325,21057530-21059603,21060172-21060442,
            21060556-21060990
          Length = 2059

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 92   VAYCFFRFFSYSHRDCTAYISWERN 18
            VA+ + R+F   +RD T+   WERN
Sbjct: 1079 VAFAYARYFLRKYRDVTSVARWERN 1103


>07_03_1769 +
           29377784-29377878,29377993-29378180,29378340-29378472,
           29378580-29378715,29378996-29379072,29379162-29380830,
           29380935-29381018,29381120-29381224,29381302-29381358
          Length = 847

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 260 SDDGSEDTXEEILDRVMTRSSIRRSAKANPKXKKMNRTKSKLLEQ 394
           SDD SE + +++LD  + +S +R+    +P  +  + T+   LE+
Sbjct: 474 SDDASEASYDKLLDEELHQSVVRQERNGSPVPQVCSTTRFSQLER 518


>10_08_0366 -
           17232010-17232061,17232546-17232601,17232692-17232727,
           17232861-17232941,17233060-17233131,17233394-17233465,
           17233555-17233659,17233754-17233804,17234075-17234109,
           17234692-17234736,17234940-17234973
          Length = 212

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +2

Query: 233 MNDSMNNXFSDDGSEDTXEEILDRVMTR------SSIRRSAKANPKXKKMNRTKSKLLEQ 394
           M+DS++N   DD +E+  E++ ++V+        S +  + K     KK+   +S  L++
Sbjct: 142 MSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSSAPKGRITGKKVQADESSELDE 201

Query: 395 AKANMRGL 418
            +  +  L
Sbjct: 202 LEKRLAAL 209


>04_04_1475 +
           33856351-33856582,33857614-33857781,33858156-33858261,
           33858391-33858442,33858525-33858642,33858736-33858766,
           33858962-33858985,33859075-33859199,33860087-33860168,
           33860319-33860441,33860539-33860592,33860669-33860738,
           33861276-33861309,33861824-33862170
          Length = 521

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 236 NDSMNNXFSDDGSEDTXEEILDRVMTRSSIRRSAKANPKXKKMNRTK 376
           +D +N     DG  DT  E+ DRV  + + + SA  N +  K  +TK
Sbjct: 390 SDRLNQLDIYDG--DTSTEVEDRVEVQVAKKASASTNARSNKRKKTK 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,887,900
Number of Sequences: 37544
Number of extensions: 98513
Number of successful extensions: 221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)