Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2387
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 237 1e-63
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 224 1e-59
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 223 1e-59
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 192 5e-50
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 165 5e-42
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 92 8e-20
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 79 5e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 7.9
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 25 7.9
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 237 bits (580), Expect = 1e-63
Identities = 113/159 (71%), Positives = 131/159 (82%)
Frame = +1
Query: 223 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQXNRITPSYVAFTQDGERLIGDAAKNQLTTN 402
GTVIGIDLGTTYSCV V KNGRVEIIANDQ NRITPSYVAFT+D ERL+G+AAKNQ +N
Sbjct: 35 GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTED-ERLVGEAAKNQAPSN 93
Query: 403 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQSDKVFAPEXISAM 582
PENT+FD KRLIGR++ ++T+ D+K FPF +V ++P V+V K F PE ISAM
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 583 VLTKMKETAEAYLGKXGTHAVVTXPAYFNDAQRQATKDA 699
+L+KMK+TAEAYLGK THAVVT PAYFNDAQRQATKDA
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDA 192
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 224 bits (547), Expect = 1e-59
Identities = 110/156 (70%), Positives = 124/156 (79%)
Frame = +1
Query: 232 IGIDLGTTYSCVGVYKNGRVEIIANDQXNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 411
IGIDLGTTYSCVG + N RVEIIANDQ NR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 412 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQSDKVFAPEXISAMVLT 591
T+FDAKRLIGR++ D VQ D+K +PFKV+ K+ KP +QV+ K F PE IS+MVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 592 KMKETAEAYLGKXGTHAVVTXPAYFNDAQRQATKDA 699
KM+ETAEAYLG T AVVT PAYFND+QRQATKDA
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDA 159
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 223 bits (546), Expect = 1e-59
Identities = 109/156 (69%), Positives = 125/156 (80%)
Frame = +1
Query: 232 IGIDLGTTYSCVGVYKNGRVEIIANDQXNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 411
IGIDLGTTYSCVG + N RVEIIANDQ NR TPSYVAFT D ERLIGDAAKNQ+ NP N
Sbjct: 5 IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63
Query: 412 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQSDKVFAPEXISAMVLT 591
T+FDAKRLIGR ++D VQ D+K +PFKV+EK+ KP +QV+ K F PE IS+MVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 592 KMKETAEAYLGKXGTHAVVTXPAYFNDAQRQATKDA 699
KM+E+AEA+LG T AVVT PAYFND+QRQATKDA
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDA 159
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 192 bits (467), Expect = 5e-50
Identities = 95/156 (60%), Positives = 112/156 (71%)
Frame = +1
Query: 232 IGIDLGTTYSCVGVYKNGRVEIIANDQXNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 411
IGIDLGTTYSCV V++ VEII NDQ R TPS+VAFT+ ERL+GDAAKNQ NP N
Sbjct: 9 IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTET-ERLVGDAAKNQAAMNPRN 67
Query: 412 TVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQSDKVFAPEXISAMVLT 591
TVFDAKRLIGR + D Q D+K +PFKV++ N P ++V K F + ISAMVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 592 KMKETAEAYLGKXGTHAVVTXPAYFNDAQRQATKDA 699
KMKE +EA L K AV+T PAYF+D+QR ATKDA
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDA 163
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 165 bits (401), Expect = 5e-42
Identities = 82/159 (51%), Positives = 105/159 (66%)
Frame = +1
Query: 223 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQXNRITPSYVAFTQDGERLIGDAAKNQLTTN 402
G VIGIDLGTT SC+ + + ++IAN + R TPS VAFT+DGERL+G +AK Q N
Sbjct: 50 GPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVIN 109
Query: 403 PENTVFDAKRLIGREWSDQTVQHDVKFFPFKVVEKNSKPHVQVQTSQSDKVFAPEXISAM 582
PENT F KRLIGR + + VQ D+K P+K+VE ++ K ++P I
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG---DAWLEARGKTYSPSQIGGF 166
Query: 583 VLTKMKETAEAYLGKXGTHAVVTXPAYFNDAQRQATKDA 699
+L+KM+ETA YLGK +AVVT PAYFND+QRQATK A
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAA 205
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 91.9 bits (218), Expect = 8e-20
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
Frame = +1
Query: 229 VIGIDLGTTYSCVGVYKNGRVEIIANDQXNRITPSYVAFTQDGERLIGDAAKNQLTTNPE 408
V+GID G + + + V +N +++I N+ NR TPS V++ + R +G+AAK+ +N
Sbjct: 7 VVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSY-GERSRFLGEAAKSAEASNFR 65
Query: 409 NTVFDAKRLIGREWSDQTVQH-DVKFFPFKVVEKNSKPHVQVQTSQSDKVFAPEXISAMV 585
NTV KRL GR + D ++ + F K+ E + +VQ + F+ + A
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 586 LTKMKETAEAYLGKXGTHAVVTXPAYFNDAQRQATKDA 699
TK+K AEA L + V++ PA+F D QR+A +A
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEA 163
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 79.4 bits (187), Expect = 5e-16
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 4/162 (2%)
Frame = +1
Query: 226 TVIGIDLGTTYSCVGVYKNGRVEIIANDQXNRITPSYVAFTQDGERLIGDAAKNQLTTNP 405
TVIGI G S + ++G+ +++AN++ NR PS +++ D E G A+ QL N
Sbjct: 25 TVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQE-YHGVQARGQLVRNA 83
Query: 406 ENTVFDAKRLIGREWSDQTVQH-DVKFFPFKVVEK-NSKPHVQV--QTSQSDKVFAPEXI 573
+N+V + + L+G+ + T+ H P V + K VQ ++ +K+
Sbjct: 84 DNSVTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEA 143
Query: 574 SAMVLTKMKETAEAYLGKXGTHAVVTXPAYFNDAQRQATKDA 699
S L ++ E+AE +LG V++ P YF DAQR+A + A
Sbjct: 144 SVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESA 185
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 502 EKNSKPHVQVQTSQSDKVFAPEXISAMVLTKMKETAEAYL 621
+KN+KP + + ++D + P + + + EAYL
Sbjct: 208 QKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYL 247
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 355 GERLIGDAAKNQLTTNPENT 414
GE ++ D+ N TNP+NT
Sbjct: 6 GENIVSDSIVNMELTNPDNT 25
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,920
Number of Sequences: 5004
Number of extensions: 47474
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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