Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2385
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    28   0.91 
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    26   4.8  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   6.4  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 187 LHRLIVSSHFITDLLHPSTHYQRFQNDEQPNPMLCT 80
           LH  I S+ F + LLH + +Y R Q   +   +LCT
Sbjct: 378 LHYKIQSTGFKSQLLHEAANYWRKQQSCEAKLLLCT 413


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +2

Query: 359 GDDAWFATNFQHXXXXXXXXXXXXWRAYGIDPGEFSSYLMRTCERLVQMGHFKLSXPGDL 538
           G+DA+     ++            W   GIDP  FS  L+R  +++          P  L
Sbjct: 50  GEDAFINLRNENYILNAVFDGVGGWANVGIDPSIFSWGLVREIKKVFNNSDEFQPSPLTL 109

Query: 539 LAQSYYEL 562
           L+++Y  L
Sbjct: 110 LSKAYAAL 117


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -3

Query: 421 SICNTNYICMLKVSCKPSVVTKLS---FTSSPI 332
           +ICN +Y+C +++   P V  K S   +++ PI
Sbjct: 250 AICNKSYMCNIQLEQSPEVSVKSSLPKYSNEPI 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,507
Number of Sequences: 5004
Number of extensions: 41599
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)