Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2385
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954...    29   3.8  
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449     28   6.6  

>01_06_1233 -
           35594510-35594687,35594985-35595100,35595364-35595463,
           35595536-35595603,35596940-35597071
          Length = 197

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 37  FIQLHNLNSAYSTFTYIT-WGLVVHHFEIFG 126
           F  L NL++ YS +  +  WG  +H+F+ FG
Sbjct: 118 FYILENLSNRYSPYLQLMCWGRYMHYFQSFG 148


>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
          Length = 604

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 231 LRRARESNLPVQKIDCIV*LLVHTLSPTFYTQALITKDFKMMN 103
           LR+ +   LP++KI CI   + H L    ++Q +I +D K  N
Sbjct: 385 LRKLQRQKLPLEKIICIALDIAHGLE-YIHSQRVIHRDVKPEN 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,666,159
Number of Sequences: 37544
Number of extensions: 242881
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)