Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2385
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-4|CAB07860.1|  330|Caenorhabditis elegans Hypothetical pr...    76   2e-14
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U50301-3|AAM29676.1|  370|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AL023828-27|CAI46622.1|  308|Caenorhabditis elegans Hypothetical...    27   7.7  

>Z93785-4|CAB07860.1|  330|Caenorhabditis elegans Hypothetical
           protein W09D10.4 protein.
          Length = 330

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
 Frame = +2

Query: 293 LVSVVXGFPKDIANGRTR---KGQFGDDAWFATNFQHXXXXXXXXXXXXWRAYGIDPGEF 463
           +++   GFPKD+ NG +    KG FGDDAWF + F++            WR YGIDP  F
Sbjct: 69  VIASCAGFPKDMLNGPSTVLDKGVFGDDAWFISRFKNTFVVGVADGVGGWRKYGIDPSAF 128

Query: 464 SSYLMRTCERLVQMGHFKLSXPGDLLAQSY 553
           S  LM+ CE+ VQ G F    P  LL  ++
Sbjct: 129 SRRLMKECEKRVQKGDFDPQKPESLLDYAF 158


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 457 TRINSICSPATNSICNTNYICMLKVSCKPSVVTKLSFT 344
           TR N++C  + N++C +   C +   C   +   +SF+
Sbjct: 717 TRSNAVCQCSPNNVCPSGASCTMGTCCSSGISPIVSFS 754


>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 460 FTRINSICSPATNSICNTNYICMLKVSCKPSVVTKLSFTSSPIGN 326
           FT  N+IC P T  + N   I  LK + + S  TKL   +S +G+
Sbjct: 176 FTNANAICIPTTLLLVNLVIIIHLK-AVRHSTYTKLFQKTSAVGS 219


>U50301-3|AAM29676.1|  370|Caenorhabditis elegans Hypothetical
           protein F20D6.8 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 454 RINSICSPATNSICNTNYICMLKVSCKPSVVTKLSFTSSPIGNVFRKT 311
           R +S+ S  +NS+ N N   +L  +  PS   + S  S+P+ N  R++
Sbjct: 28  RTSSVSSSNSNSV-NANSTMLLSPNFSPSPCPRRSLPSTPLPNGHRRS 74


>AL023828-27|CAI46622.1|  308|Caenorhabditis elegans Hypothetical
           protein Y17G7B.23 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 144 KRSVIKCELTIKRCSQFSGQADCS 215
           KR+ +    T K CS+F G  DCS
Sbjct: 154 KRTNLDAMHTCKSCSEFDGNGDCS 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,243,529
Number of Sequences: 27780
Number of extensions: 232662
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)