Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2384
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.24
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 0.43
03_04_0006 + 16257288-16259522 30 0.99
06_03_0854 + 25400855-25403741,25406174-25407708 29 1.7
06_03_1448 + 30235336-30236763 29 2.3
06_03_1443 + 30182018-30183445 29 2.3
06_03_1440 + 30166515-30167942 29 2.3
06_03_1437 + 30151030-30152457 29 2.3
06_03_1429 + 30100834-30102261 29 2.3
06_03_1425 + 30084383-30085810 29 2.3
06_03_1420 - 30053713-30055140 29 2.3
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 2.3
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 3.0
12_02_0077 - 13288916-13289659,13289689-13289691 28 4.0
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 4.0
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 4.0
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 27 5.3
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 27 7.0
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543... 27 7.0
01_01_1195 - 9567023-9567789,9567871-9568120 27 7.0
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 27 9.2
06_03_1023 - 26952195-26952635,26952723-26952934,26953038-269537... 27 9.2
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796... 27 9.2
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -1
Query: 429 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 307
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 33 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 179
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 0.99
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 240 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 88
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 240 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 115
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 434 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 297
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 434 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 297
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 434 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 297
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 434 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 297
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 434 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 297
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 434 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 297
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 434 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 297
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 362 TTLHAWNETPCARRYY 315
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 449 PPQSNSPPGSVLEPDHAGVLNGDE 378
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 183 ESSSTGSSFPADSPKPVPLAVVSLDSR 103
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 326 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 448
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -1
Query: 213 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 106
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 444 PVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 322
P++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 398 PLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 293 GRKRCAVD-NIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 448
GR+ C+VD +GG F GG A+ R+ + +P +G A + TGA
Sbjct: 48 GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGA 92
>02_05_0726 -
31252210-31253166,31253667-31253840,31254320-31254364,
31254463-31254573,31254669-31254746,31255170-31255234,
31255358-31255733,31256891-31257035,31257308-31257462,
31259036-31259182
Length = 750
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 231 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 130
SP Y P ++ N + S +T S P PK P
Sbjct: 159 SPKYVKPAVAKQNGEVVSRATKSDAPVSKPKVDP 192
>01_01_1195 - 9567023-9567789,9567871-9568120
Length = 338
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 198 YNARLESSSTGSSFPADSPKPVPLAVVSL 112
+ R SSS+ S PA +P P P VV+L
Sbjct: 157 FRRRKPSSSSASPAPAPAPPPPPQPVVAL 185
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 440 SNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASAQPS 285
S +PP + + VL D++ L+A E+P + P TAS PS
Sbjct: 405 SENPPTFAVLSSRSDVLPEDQKEHPAANLNAQIESPEDHKEVDPTTASGIPS 456
>06_03_1023 -
26952195-26952635,26952723-26952934,26953038-26953757,
26955042-26955735
Length = 688
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 90 PTVPIYYLAKPQPRERAWENQRGKKTLLSLTLV 188
P VPI P P +W + R K L+ + LV
Sbjct: 246 PEVPILASPSPSPLSSSWWSPRSLKILMIIALV 278
>03_02_0763 -
10977793-10978092,10978896-10978996,10979580-10979648,
10979787-10979857,10979946-10980100,10980348-10980477,
10980946-10981013,10981335-10981592
Length = 383
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 437 NSPPGSVLEPDHAGVL--NGDERFRHVTTLHAWN 342
N+ PG + +H NG +RF H+ L++WN
Sbjct: 182 NAIPGRLYGGNHIDNADGNGGDRFGHLVDLYSWN 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,476,209
Number of Sequences: 37544
Number of extensions: 295307
Number of successful extensions: 1077
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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