Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2384
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   2.7  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    27   6.3  
Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 255  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 136
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 255  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 136
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = +2

Query: 104 LLSSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFIT 283
           + S  TT+    + +S+  ++   LD   AL G +R VA + DR  R SLKN     F+T
Sbjct: 32  IFSLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLT 87

Query: 284 YSVGRKRCAVDNIGGRTVF 340
           Y+      +  NI  R+ F
Sbjct: 88  YTPVILNASTTNIVTRSKF 106


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -3

Query: 349 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 215
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -1

Query: 252 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 136
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


>Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical
           protein T08G3.7 protein.
          Length = 943

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
 Frame = +3

Query: 102 IYYLAKPQPRERAW------ENQRGKKTLL 173
           +YY  KP   ER W      +NQ GK TLL
Sbjct: 589 LYYFGKPLDYERRWRYSLFLDNQDGKNTLL 618


>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
           protein F36D3.5 protein.
          Length = 1152

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
 Frame = +3

Query: 102 IYYLAKPQPRERAW------ENQRGKKTLL 173
           +YY  KP   ER W      +NQ GK TLL
Sbjct: 790 LYYFGKPLDYERRWRYSLFLDNQGGKNTLL 819


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
 Frame = +3

Query: 102 IYYLAKPQPRERAW------ENQRGKKTLL 173
           +YY  KP   ER W      +NQ GK TLL
Sbjct: 851 LYYFGKPLDYERRWRYSLFLDNQDGKNTLL 880


>Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical
           protein C05B5.2 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 258 FFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPK 139
           F+S+  A RS +   P+MS     + +++T +  PA S K
Sbjct: 46  FYSNITAPRSTSVLAPVMSSLEVYINTTTTSAFAPAQSIK 85


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 388 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 272
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 661


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 388 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 272
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 717


>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
           protein R02F2.2 protein.
          Length = 1182

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 210 LMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWESR 82
           +++P +A    SST SS P   P+P   A VS  +R   + SR
Sbjct: 1   MLNPNDADDSDSSTDSSPPVAVPRPKRSATVSPSTRNSFYNSR 43


>Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 45  PRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGK 161
           P H ++D    I ++ ++ I Y  +P   ER W++ R K
Sbjct: 38  PLHKVTDYKHEIWKLISIEIGYDGQPVELERKWKHMRDK 76


>Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 45  PRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGK 161
           P H ++D    I ++ ++ I Y  +P   ER W++ R K
Sbjct: 38  PLHKVTDYKHEIWKLISIEIGYDGQPVELERKWKHMRDK 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,559,279
Number of Sequences: 27780
Number of extensions: 217918
Number of successful extensions: 724
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)