Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2380
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1324 + 32659752-32661972,32662067-32662761 31 0.80
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 31 1.1
05_03_0035 - 7592177-7592938 31 1.1
05_03_0033 - 7585267-7586028 31 1.1
04_03_0446 - 16012926-16013042,16013266-16013469 30 1.8
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 29 2.4
09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548... 29 3.2
03_06_0190 + 32219878-32220465,32220551-32220652,32220730-322207... 29 3.2
03_02_0992 + 13049871-13050449 29 3.2
06_03_0112 + 16781770-16782020,16782032-16782764 28 5.6
04_03_0233 - 13069467-13069925 28 7.4
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 27 9.8
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 27 9.8
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 9.8
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 27 9.8
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +3
Query: 285 EHLDRETKQDPADSPVH--HHRVATQSFLEM-ERGPAAEHRPPSVAEKLMDHMADKFTDS 455
EH + AD+ VH HR + S E P+ EHR SV+ A TDS
Sbjct: 396 EHRQLSMSLNDADTEVHGGEHRRLSMSLNEAGTEQPSGEHRQLSVSSS----DAGSSTDS 451
Query: 456 ESDADTAXESP 488
SD+DT P
Sbjct: 452 TSDSDTPGGDP 462
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +1
Query: 34 ATGALPPHAARRSTTPRRDSAGLTRSSHPRTRVCTAPYRSLILL 165
A A PPHA +TTPRR L R S P + C A R + L
Sbjct: 70 AIKAAPPHATAAATTPRR----LRRQSSPVSVPCGASPRKIAAL 109
>05_03_0035 - 7592177-7592938
Length = 253
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 300 ETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAX 479
E +P P + S+ + + GP E +P A + T SES ++
Sbjct: 52 EKSSEPEAKPASQQEPKSDSYSQAKPGPKDEPKPEPEAMSASQPESKPATYSESKPESKA 111
Query: 480 ESPLHRPEPXVE 515
E P +PEP E
Sbjct: 112 E-PESKPEPKAE 122
>05_03_0033 - 7585267-7586028
Length = 253
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 300 ETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAX 479
E +P P + S+ + + GP E +P A + T SES ++
Sbjct: 52 EKSSEPEAKPASQQEPKSDSYSQAKPGPKDEPKPEPEAMSASQPESKPATYSESKPESKA 111
Query: 480 ESPLHRPEPXVE 515
E P +PEP E
Sbjct: 112 E-PESKPEPKAE 122
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 361 SWRWNVGPQRNIGRLPSPKSLW 426
SWRW GR PSP+ +W
Sbjct: 46 SWRWRQAEGSPAGRSPSPRQIW 67
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 446 KFVGHVVHKLFGDGRRPMFRCGPTFHLQETLSGH 345
K+ HV+ LF D CG F L+E LS H
Sbjct: 879 KYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVH 912
>09_03_0099 +
12353777-12353877,12354022-12354220,12354720-12354845,
12354935-12355093,12356286-12356415,12356551-12356592,
12357507-12357806,12357933-12357984,12358157-12358234,
12359133-12359229
Length = 427
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 300 ETKQDP-ADSPVHHHRVATQSFLEMERGPAAEH-RPPSVAEKLMDHMADKFTDSESDADT 473
E ++D ADSP T S L+ME GP+A H + K D D F D + D
Sbjct: 267 EAEEDMFADSPKDK---TTASLLDMEPGPSAAHTSTTTTTSKEDDSDFDMFGDDDDKTDV 323
Query: 474 AXES 485
+S
Sbjct: 324 KRDS 327
>03_06_0190 +
32219878-32220465,32220551-32220652,32220730-32220795,
32220977-32221042,32221135-32221422,32222178-32222276,
32222821-32222914,32223923-32223975
Length = 451
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 22 QCRPATGALPPHAARRSTTPRRDSAGLTRS 111
+CR A ALPP RRS+T D AG + S
Sbjct: 136 RCRDAGAALPPERPRRSST--HDGAGTSSS 163
>03_02_0992 + 13049871-13050449
Length = 192
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 40 GALPPHAARRSTTPRRDSAGLTRSSHPRTRVCTAPYR 150
G LPPH RRS P G+ +S P P R
Sbjct: 76 GVLPPHRHRRSVPPPSLGRGVASTSPPLHAATVTPLR 112
>06_03_0112 + 16781770-16782020,16782032-16782764
Length = 327
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/80 (28%), Positives = 32/80 (40%)
Frame = -1
Query: 302 FTIEMLEIIRRVLVALHGLXXXXXXXXXXGEASQEGACALHDTLQKSKISDR*GAVQTRV 123
F I+ E VL A++ L EA E LH + +++ G + TRV
Sbjct: 233 FRIQPNEYFNPVLRAINTLSENIQRLTTGHEAMYEDVRGLHSNV--GGLNESVGRLSTRV 290
Query: 122 RGCDERVSPAESRRGVVLRR 63
D+RV ES V R
Sbjct: 291 GVLDQRVQMLESTHAFVYHR 310
>04_03_0233 - 13069467-13069925
Length = 152
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 633 WAPQVXSGTAEXGXGAQHRVSGRELQASVVPVSER 529
WAP G G G + RV GRE +A+ V R
Sbjct: 5 WAPAQILGCRRRGGGGRRRVRGRE-EAAAASVKRR 38
>06_03_1309 + 29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 357 SEWPRDDGVPVNPPGLV 307
S WP DD P+N PG +
Sbjct: 1140 SSWPEDDKEPLNAPGYI 1156
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +3
Query: 276 DDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDS 455
DD E LD + DS + + S ++ E + ++EKL D +D+ +D
Sbjct: 542 DDTEELDEDQDISDNDSEENDDELELDSDMDEENDVSESDDDEELSEKLDD--SDEGSDQ 599
Query: 456 ESDADTAXES 485
+ D+D +S
Sbjct: 600 DDDSDQDDKS 609
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 79 PRRDSAGLTRSSHPRTRVCTAPYRSLIL 162
P RD+ G+TR+ R RV TA +R L+L
Sbjct: 152 PWRDAGGITRAMLARARV-TASFRLLVL 178
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 143 GAVQTRVRGCDERVSPAESRRGVVLRRAACGGSAPVAGRHCT 18
G V +R +ER+ + RRG+ AA G + AG+ C+
Sbjct: 809 GVVGVALRLREERLESSPHRRGLAAFAAATSGRSRWAGQRCS 850
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,770,283
Number of Sequences: 37544
Number of extensions: 355634
Number of successful extensions: 1274
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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