Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2380
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    26   1.2  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   4.8  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   6.3  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   8.4  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   8.4  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 315 PADSPVHHHRVATQSFLEMERGPAAEHRPP 404
           P   P+HH   A+Q F+        +H PP
Sbjct: 357 PIYQPLHHFSAASQRFMLRSCNSLGDHIPP 386


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 377 TFHLQETLSGHAMM 336
           TFHL + LSGH  +
Sbjct: 928 TFHLSQVLSGHGFL 941


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 279  HPSSPGRASW 250
            H SSPGR SW
Sbjct: 1216 HKSSPGRGSW 1225


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 427 TTWPTNLPTVSQ 462
           T WPT+ PT SQ
Sbjct: 384 TDWPTHQPTTSQ 395


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 377  TFHLQETLSGH 345
            TFHL + LSGH
Sbjct: 988  TFHLSQVLSGH 998


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,344
Number of Sequences: 2352
Number of extensions: 10931
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)