Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2380
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    30   1.2  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    30   1.6  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    30   1.6  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   2.2  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   2.2  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    28   5.0  
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    27   8.7  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    27   8.7  
AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 489  GATLXQYRRLTHCR*ICRPCGP*AFRRRKAADVPLRAHVPSPRNSEWPRDDGVPVNPPG 313
            G    Q+  L+ C  IC P GP   +       P  A V  P  ++ P+   +P+  PG
Sbjct: 1321 GGNTNQFETLSECERICTPSGP---KTPTLPPTPTPATVAVPVPAQTPKVPQLPIGAPG 1376


>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +1

Query: 325 HRYTIIAWPLRVSWRWN---VGPQRNI 396
           H      WP R SW WN   +GP+R+I
Sbjct: 120 HHEGFTMWPSRTSWNWNSMDIGPKRDI 146


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 308 TRPGGFTGTPSSRGHSEFLGDGTWARSGTSAAFRR 412
           T+PG F G P  RG     G G +AR G + A  R
Sbjct: 331 TQPGSFRGAP--RGRGNIRGRGGFARGGFTGAINR 363


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 28  RPATGALPPHAARRSTTPRRDSAGLTRSSHPRTR 129
           RP   A  P +AR+ T+ R  S+  +R+SH R R
Sbjct: 607 RPTPNASRPSSARQVTSSRPSSSASSRTSHSRPR 640


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 28  RPATGALPPHAARRSTTPRRDSAGLTRSSHPRTR 129
           RP   A  P +AR+ T+ R  S+  +R+SH R R
Sbjct: 607 RPTPNASRPSSARQVTSSRPSSSASSRTSHSRPR 640


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 246  QTMKRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEK 419
            +++K  ++S + F     E +QD +DSP+H  +     F         +   P   EK
Sbjct: 3946 ESLKSPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVKSEQPHDEEK 4003


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 246  QTMKRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEK 419
            +++K  ++S + F     E +QD +DSP+H  +     F         +   P   EK
Sbjct: 3946 ESLKSPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVKSEQPHDEEK 4003


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 333 HHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAXESPLHRPE 503
           H+ ++ ++S + +E+GP       SV  ++   +A K    +SD+DT  E PL   E
Sbjct: 256 HNEKLVSESAMPIEKGPTRPAAMASVIGEMKKKVAAKAKLLDSDSDTDRE-PLGSSE 311


>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 285 EHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESD 464
           E +D ET Q+ +DSP    +  T+  +E+E G   E  P        D   +K  + E D
Sbjct: 172 EKVDAETAQE-SDSPQEAEKEKTEPQVELENGGQEEDEPD------RDESIEKQPEKEDD 224

Query: 465 AD 470
            D
Sbjct: 225 GD 226


>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 396 DVPLRAHVPSPRNSEWPRDDGVPVNPPGLV 307
           D+ +R  VP P+  E  R   VP NPP L+
Sbjct: 462 DLTIRVVVP-PKRREGKRKSEVPANPPALL 490


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 396 DVPLRAHVPSPRNSEWPRDDGVPVNPPGLV 307
           D+ +R  VP P+  E  R   VP NPP L+
Sbjct: 503 DLTIRVVVP-PKRREGKRKSEVPANPPALL 531


>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
           protein F13C5.2 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +3

Query: 255 KRDQDSTDDFEHLDRETKQDPADS----PVHHHRVATQSFLEMERGPAAEHRPPSVAEKL 422
           K ++D  D+ E  + E   D  D      V  H  A+ S       P A+H   ++ E  
Sbjct: 277 KEEEDHEDEREEQEEEDSSDEEDGLDDDDVRRHIPASTS------APVAKHPEAAMPEPA 330

Query: 423 MDHMADKFTDSESDADTAXESPLHRPEPXV 512
            +H + + +++++  + +   P+H  E  +
Sbjct: 331 AEHSSIQSSEAQALGEISGAHPIHIGESEI 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,631,266
Number of Sequences: 27780
Number of extensions: 252102
Number of successful extensions: 818
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)