Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2379
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 34 0.017
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 32 0.069
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.12
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 31 0.21
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 30 0.37
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.48
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 29 0.85
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.1
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.5
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 28 1.5
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 27 2.0
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.0
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.5
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 4.5
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce... 26 6.0
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 25 7.9
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 7.9
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 7.9
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 34.3 bits (75), Expect = 0.017
Identities = 28/113 (24%), Positives = 52/113 (46%)
Frame = -2
Query: 348 LSQSQTNNTIPLPLKEEIIETXDHKPEKLTEEVAQISVELADTEEKISEVLKDNSNVETK 169
L +Q ++TIP + + + D E++ EE + + + KD ++
Sbjct: 642 LVPTQLDSTIPTQI-DSVQRNKDQDDEEILEERRESRRDSKTFLSRTMLYNKDTGKADSA 700
Query: 168 AEITLFEETXIKEIKNEDIVLKGLIQDDISHDTIGEIQLQNMLENASETTKNE 10
L EE I E +E + GL D +S D+ E+++QNM+++ + K E
Sbjct: 701 WASDLIEEQAI-ESDDEYAGIGGLSDDGLS-DSDAELEVQNMIDDETTIQKGE 751
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 32.3 bits (70), Expect = 0.069
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = -2
Query: 372 HAVNXTAVLSQSQTNNTIPLPLKEEIIETXDHKPEKLTEEVAQISVELADTEEKISEVLK 193
H +N T SQS + +P P + + H P + SV+ EK+ K
Sbjct: 367 HPLNATNGTSQSNISTPLPEPTPGQPRKVSGHNPPSARRLPSASSVKF---NEKLKNASK 423
Query: 192 DNSNVETKAEITLFEETXIKEIKNED 115
+ E KA + +E++ EI+N+D
Sbjct: 424 QSIQNENKASYSSYEDS---EIQNDD 446
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.5 bits (68), Expect = 0.12
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Frame = -2
Query: 393 VAVHNDTHAVNXTAVLSQSQTNNTIP--LPLKEEIIETXDHKPEKLTEEVAQISVELADT 220
V V D +A N + S++ N + +KE + +T + + EK+ + ++
Sbjct: 513 VQVALDEYAQNPSTA-SETLVNKELANFSSIKEAVSKTLELR-EKVRALECDVEIQKQTV 570
Query: 219 EEKISEVLKDNSNVETKAEITLFEETXIKEIKNEDI-----VLKGLIQDD----ISHD-T 70
+ +IS +K+NSN ++ L E +IKNE + +LK ++ +SH+ +
Sbjct: 571 QYQISNAVKENSNTLSEQIKNLESELNSSKIKNESLLNERNLLKEMLATSRSSILSHNSS 630
Query: 69 IGEI--QLQNMLENASETTKNEEI 4
G I +++++ E+ E KN E+
Sbjct: 631 AGNIDDKMKSIDESTRELEKNYEV 654
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 30.7 bits (66), Expect = 0.21
Identities = 23/89 (25%), Positives = 48/89 (53%)
Frame = -2
Query: 267 KLTEEVAQISVELADTEEKISEVLKDNSNVETKAEITLFEETXIKEIKNEDIVLKGLIQD 88
KL+ +V +++V+ + I+E+ S+++T + L + IK+I++E + Q
Sbjct: 241 KLSLKVEELTVQASQKHSHIAEM---ESSLQTSKQEVLILKEKIKKIEDER-----MRQM 292
Query: 87 DISHDTIGEIQLQNMLENASETTKNEEIK 1
+S D + QLQ + EN + + + E+K
Sbjct: 293 SVSSDRTLDSQLQTVNENITRISTSIELK 321
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 29.9 bits (64), Expect = 0.37
Identities = 23/73 (31%), Positives = 40/73 (54%)
Frame = -2
Query: 303 EEIIETXDHKPEKLTEEVAQISVELADTEEKISEVLKDNSNVETKAEITLFEETXIKEIK 124
+E+ + D E LTEE++ +SV+ + E+ SE KD+++V T I+E K
Sbjct: 270 DELEKLIDTSVETLTEEISLLSVD-STIEKNASEQKKDDNSVN--------PFTKIEEKK 320
Query: 123 NEDIVLKGLIQDD 85
+++ L L+ DD
Sbjct: 321 KDEVTL--LVSDD 331
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.5 bits (63), Expect = 0.48
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Frame = -2
Query: 303 EEIIETXDHKPEKLTEEVAQISVELADTEEKISEVLK-----DNSNVETKAEITLFEETX 139
EE I + EKLT+E+ Q+S D + E+ K + N + K + T
Sbjct: 591 EESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNL 650
Query: 138 IKEIKNEDIVLKGLIQDDISHDTIGEIQLQNMLE-NASETTKNEEIK 1
++++K + + L +++ + + ++ +++ N ++ NE+I+
Sbjct: 651 LEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIE 697
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 28.7 bits (61), Expect = 0.85
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = -2
Query: 276 KPEKLTEEVAQISVELADTEEKIS---EVLKDNS-NVETKAEITLFEETXIKEIK-NEDI 112
+P L +V + E A K+S E+L ++ NVE + EI E I+ + +EDI
Sbjct: 281 RPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKENVEKRTEID--EYLQIQPLPTDEDI 338
Query: 111 VLKGLIQDDISHDTIGEIQLQNMLE 37
LI+DD S + +L+ +LE
Sbjct: 339 KKIPLIEDDTSFMNVNPDELEELLE 363
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -2
Query: 255 EVAQISVELADTEEKISEVLKDNSNVETKAEITLFEETXIKEIKNEDIVLKGLIQDDIS 79
EV IS+EL T+EK+ + SN++ K L E ++ + K L++ +IS
Sbjct: 944 EVEAISIELERTKEKLRMAELEKSNIQQK---YLASEKTLEMMNETHEQFKHLVESEIS 999
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = -2
Query: 282 DHKPEKLTEEVAQISVELADTEEKISEVLKDNSN-VETKAEITLF------EETXIKEI- 127
D P+K+T V S EE E + N V+ +A LF E K++
Sbjct: 43 DFLPQKMTRNVEYESGYGGLIEENDLESHSNEPNLVQGRASFGLFNKELGEENVDEKDVS 102
Query: 126 KNEDIVLKGLIQDDISHDTIGEIQLQNMLENASETTKNEEIK 1
KNE++ + G D S T E + Q ++ +E ++ E+K
Sbjct: 103 KNEEVDVNGTKITDTSELTERERRKQELVSKKAEASRKMEVK 144
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 1.5
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = -2
Query: 345 SQSQTNNTIPLPLKEEI--IETXDHKPEKLTEEVAQISVELADTEEKISEVLKDNSNV-E 175
S Q NN + L E+ +ET + +L E+++ +L DT+ ++ + ++N+ V
Sbjct: 912 SLKQINNELESELLEKTSKVETLLSEQNELKEKLSLEEKDLLDTKGELESLRENNATVLS 971
Query: 174 TKAEITLFEETXIKEIKNEDIVLKGLIQDDISHDT-IGEIQLQNMLEN 34
KAE ++ + I +D L L + + T I E++L N N
Sbjct: 972 EKAEFNEQCKSLQETIVTKDAELDKLTKYISDYKTEIQEMRLTNQKMN 1019
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 276 KPEKLTEEVAQISVELADTEEKISEVLKDNSNV 178
+ E T+E A+ +V + ++ ++ L DNSNV
Sbjct: 88 REEPYTQEEAEAAVNIGQPKQSVASKLADNSNV 120
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = -2
Query: 297 IIETXDHKPEKLTEEVAQISVELADTE------EKISEVLKDNSNVETKAEITLFEETXI 136
I E H P K E+AQ+ ++ A+ E + +++ D + K+ I+ F+E+
Sbjct: 412 IFEKATHVPYKTVNELAQVWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHISFFDESLS 471
Query: 135 KEIK 124
+++
Sbjct: 472 PQVR 475
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -2
Query: 345 SQSQTNNTIPLPLKEEIIETXDHKPEKLTEEVAQISVELADTEEKISEVLKDNSNVETKA 166
S+ N++ L K+E+ E + +L E++ + + +E IS LKD+ VETK
Sbjct: 137 SEISNQNSLILQKKDEL-EKSIQRCSELEEKINSLESAQSIEQEVISS-LKDDKTVETKN 194
Query: 165 EI 160
++
Sbjct: 195 DV 196
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 342 QSQTNNTIPLPLKEEII-ETXDHKPEKLTEEVAQ-ISVELADTEEKISEVLKDNSNVETK 169
+S + +TI + ++E++ ++ K +EV + S+ D+EEKI E K NS+
Sbjct: 250 ESNSCSTISINKEDEVVPKSPLSLDRKKVDEVEEHSSIAKLDSEEKIRETKKKNSSTSLS 309
Query: 168 AEIT 157
+ T
Sbjct: 310 PDPT 313
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Frame = -2
Query: 333 TNNTIPLPLKEEIIETXDHKPEKLTEEVAQISVE-------LADTEEKISEVLKDNS-NV 178
T+N I L ++++ +HK EKL + +I E + EK+ E+ +S ++
Sbjct: 89 TDNYISLETGDQLMLAQNHKEEKLLQTEDEIQDEGYSGFENYVEESEKLQEIYHHSSESL 148
Query: 177 ETKA-EITLFEETXIKEIKNEDI 112
T++ ++ + ++ E+ +EDI
Sbjct: 149 RTRSIQMAVDQKNMEMELDDEDI 171
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -2
Query: 270 EKLTEEVAQISVELADTEEKISEVLKDNSNVETKAEITLFEETXIKEIKNED-IVLKGLI 94
E EE + + + K + KD+ N+ EI+L EE + N D + +G +
Sbjct: 69 EAFDEEDEKRFADWSFNASKSGKSNKDHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSV 128
Query: 93 QDDISHDTIGEIQLQNMLENASETTKNE 10
I + + + L +L+N + KNE
Sbjct: 129 GSSIDENEL--VDLDTLLDN-DQPEKNE 153
>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 204 EVLKDNSNVETKAEITLFEETXIKEIKNEDIVLKGLIQDDISHDTIG--EIQLQNMLENA 31
E++ NSN T + + E+KNE+++ G Q+D+S I + ++N + A
Sbjct: 208 ELIPSNSNKGTALQY--ITSNILPEVKNENVISFGDGQNDLSMFAIAGWSVAIKNGMPIA 265
Query: 30 SETTK 16
E K
Sbjct: 266 IEKAK 270
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = -2
Query: 270 EKLTEEVAQISVELADTEEKISEVLKDNSNVETKAEITLFEETXIKEIKNEDIVLK 103
+++ EE+ + + D I E L DN N+ +A+ L + E+ + + K
Sbjct: 25 DRIVEEIVTDRMGIVDLVTSIGEYLTDN-NISVRAKAVLLLSQTLGELPKDRLPAK 79
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = -2
Query: 246 QISVELADTE-EKISEVLKDNSNVETKAEITLFEETXIKEIKNEDIVLKGLI---QDDIS 79
+ SVEL +E EK + D S++++ + F K I + +K + ++D+
Sbjct: 1058 EYSVELLISEAEKQEDTSTDESDIKSN-KFGFFRVWDNKHISSNHYEVKENVLVDEEDVW 1116
Query: 78 HDTIGEIQLQNMLENASETTKNEEIK 1
+ + + MLE ETT N ++
Sbjct: 1117 SVILKQREKDAMLEKTDETTSNRRLR 1142
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 222 TEEKISEVLKDNSNVETKAEITLFEETXIKEIKNED 115
T + + D+S+ E K E + +ET IKE+ +D
Sbjct: 9 TLDTLRRRFNDSSSEEDKLEKNIQDETSIKEVSLQD 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,892
Number of Sequences: 5004
Number of extensions: 36476
Number of successful extensions: 152
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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