Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2379
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0472 - 3473096-3474288,3474833-3474938 34 0.094
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 34 0.12
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 32 0.38
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 31 0.88
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 30 1.5
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 30 1.5
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 2.0
07_02_0012 - 11770058-11770770,11770919-11771000,11771064-117710... 29 2.7
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 6.2
03_02_0332 + 7559469-7560892,7563193-7563298,7563403-7563491,756... 28 6.2
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 28 8.2
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 34.3 bits (75), Expect = 0.094
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = -2
Query: 351 VLSQSQTNNTIPLPLKEEIIETXDHKPEKLTEEVAQISV---ELADTEEKISEVLKDNSN 181
+L Q++ + LKEEI EKL+ A+I ELAD EK+ + NS+
Sbjct: 264 LLGQNKKLEAEIVNLKEEIASDRQQYEEKLSRSDAEIDKCRQELADASEKLLQEKLSNSS 323
Query: 180 VETKAEITLFEETXIK--EIKNEDIVLKGLIQDDISHDTIGEIQLQNMLENASETTKNEE 7
V + + T+ E IK E+ E ++++ + ++ E + L +A+E E+
Sbjct: 324 VTAELQETI-ESIRIKLEEVSEEKLLVENKFKQLEEANSEAE-KYNQELSHATEKLSEEK 381
Query: 6 IK 1
+
Sbjct: 382 FR 383
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/97 (23%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = -2
Query: 309 LKEEIIETXDHKPEKLTEEVAQISVELADTEEKISEVLKDNSNVETKAEITLFEETXIKE 130
L+E++ D K + L E+ + + +D ++K S + + V+ E + ++E
Sbjct: 354 LEEDVCRHVDEK-KTLQNELCHLKEDRSDLDKKHSSIKEQIQAVDLNVESL---QALVQE 409
Query: 129 IKNEDIVLKGLIQDDISHDTIGEIQLQNM--LENASE 25
+K+ ++ LKG+I+ +H++ + ++N+ LE SE
Sbjct: 410 LKDGNVELKGIIR---NHESTEVLHIENLRRLERMSE 443
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/80 (22%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = -2
Query: 258 EEVAQISVELADTEEKISEVLKDNSNVETK-AEITLFEETXIKEIKNEDIVLKGLIQDDI 82
+EV ++++E+ EK++E+ + N+E +E+ E+ ++ ++ +++++ L +D+I
Sbjct: 579 QEVQRLTMEIQMANEKLNELKQTKVNLENAVSELKKEVESLTEQNRSSELLIQEL-RDEI 637
Query: 81 SHDTIGEIQLQNMLENASET 22
+ T +LQN +++ T
Sbjct: 638 NSLTDSRNELQNEIQSLRST 657
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = -2
Query: 282 DHKPEKLTEEVAQISVELADTEEKISEVLKDNSNVETK 169
D + EKL +E++ +S E + ++KIS VL+++ E++
Sbjct: 149 DQEHEKLQKEISSLSQENQELKKKISSVLENSDRAESE 186
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = -2
Query: 303 EEIIETXDHKPEKLTEEVAQISVE-------LADTEEKISEVLKDNSNVETKAEITLFEE 145
E ++E+ K ++L E + QI+ E + + EEK E LK+ ++E + + +E
Sbjct: 649 EAVMESASEKEKELVESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSLEERLQ---SQE 705
Query: 144 TXIKEIKNEDIVLKGLIQDDISHD-TIGEIQLQ 49
+ + ++ E +V G ++ SH+ TI ++ LQ
Sbjct: 706 SKVLALE-ESLVKMG--EEKESHEGTIADLNLQ 735
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -2
Query: 234 ELADTEEKISEVLKDNSNVETKAEITLFEETXIKEIKN-EDIVLKGLIQDDISHDTIGEI 58
+LA EKI+EVL+ N V+++ + F ++ K +K +D +++ Q+ ++ + EI
Sbjct: 815 KLAGGIEKITEVLRLNEEVKSREDAWRFHDSMQKFLKRADDDIIRVQAQESVALSLVKEI 874
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/80 (22%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = -2
Query: 258 EEVAQISVELADTEEKISEVLKDNSNVETK-AEITLFEETXIKEIKNEDIVLKGLIQDDI 82
EEV +++ E+ EK++E+ + N+E +E+ E ++ ++ +++++ L +D+I
Sbjct: 359 EEVQRLTKEIQMANEKLNELKQTKVNLENAVSELKKEVENLTEQNRSSELLIQEL-RDEI 417
Query: 81 SHDTIGEIQLQNMLENASET 22
+ + +LQN +++ T
Sbjct: 418 NSLKDSKNELQNEIQSLRST 437
>07_02_0012 -
11770058-11770770,11770919-11771000,11771064-11771072,
11771630-11771877,11772006-11772183,11772270-11772278
Length = 412
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = -2
Query: 273 PEKLTEEVAQISVELADTEEKISEVLKDNSNVETKAEITLFEETXIKEIKNEDIVLKGLI 94
PEK + E A+ D +++SE D + I L E +EIK + +KG +
Sbjct: 119 PEKRSSETAKKDAAEQDMGKEMSEEDMDPPEMVVVMRIDLHCEACCEEIKRRILKIKG-V 177
Query: 93 QDDISHDTIGEIQLQNMLENAS 28
++ H ++ ++ +E A+
Sbjct: 178 EEVTPHMKSSQVMVRGKVEPAT 199
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 153 FEETXIKEIKNEDIVLKGLIQDDISHDTIGEIQLQNMLENASETTKN 13
FE+ +KEIKN + + + I G+ +QN++E+ S+ N
Sbjct: 268 FEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHN 314
>03_02_0332 +
7559469-7560892,7563193-7563298,7563403-7563491,
7563780-7563841,7564247-7564278
Length = 570
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 306 KEEIIETXDHKPEKLTEEVAQISVELADTEEKISEVLKDNSNVETKAEITLFEETXIK 133
+E++IE +H+ T VA V LA+TEE + E V E+ +E K
Sbjct: 287 EEQVIEEKEHQLAAATAPVAIPGVALAETEE-LKEEQSSEKAVNVHEEVQSKDEAKCK 343
>04_03_1002 - 21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = -2
Query: 309 LKEEIIETXDHKPEKLTEEVAQISVELADT---EEKISEVLKDNSN-VETKAEITLFEET 142
++ E+ +T +L+E+ ++ + AD ++++ + +N+ VET A++ +
Sbjct: 812 IRTEMSQTFSKLSTQLSEKTFELEIMSADNRILQDQLQAKVSENAELVETVAQLRQEIDN 871
Query: 141 XIKEIKNEDIV 109
+K KNED V
Sbjct: 872 LLKTAKNEDNV 882
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,079
Number of Sequences: 37544
Number of extensions: 205905
Number of successful extensions: 515
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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