Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2378
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.093
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.12
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.28
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 30 0.38
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.50
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.6
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 3.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.5
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.5
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 6.1
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 6.1
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 6.1
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 8.1
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 8.1
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 25 8.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.093
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 11/159 (6%)
Frame = +2
Query: 104 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLL---SGRXXXXXXXXXXXX 274
++S P+ T S +T +A+++ + S SP PS++ + ST + G
Sbjct: 82 SASTPIITESTSSTSSASTTGSSS--SPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVP 139
Query: 275 XIGLNSS----PPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTP 442
+S+ PP+ T + + LP + C TS T+ T T P
Sbjct: 140 PTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTS--TSIPPTGGSSSLSTPITPTVPP 197
Query: 443 VPASG---PIPPEDKDVTN-NKKKQRTASSAPKSSWLMP 547
S PIPP T+ N T S++ +S +P
Sbjct: 198 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIP 236
Score = 31.9 bits (69), Expect = 0.093
Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 5/149 (3%)
Frame = +2
Query: 116 PLKTASMKTTDNATSSSNVSMES-PQPSSARTVLCSTLL--SGRXXXXXXXXXXXXXIGL 286
P T+S TS+S+ S P P+++ + ST + +G
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 312
Query: 287 NSSPPSPTHNVPAAMDSLPIP-TPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPI 463
S+PP P S P+P T T+ST+ TST ++ P
Sbjct: 313 TSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPP 372
Query: 464 PPEDKDV-TNNKKKQRTASSAPKSSWLMP 547
P T++ T++S S+ + P
Sbjct: 373 PASTSSTGTSSSPLLSTSTSCTTSTSIPP 401
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +2
Query: 104 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLS 232
+SS P+ TAS+ T+ + S+S + SP P+++ T S++LS
Sbjct: 94 SSSTPI-TASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.28
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 3/151 (1%)
Frame = +2
Query: 92 LQAPNSSAPLKTASMKTTDNATSSSNVSMESPQP-SSARTVLCSTLLSGRXXXXXXXXXX 268
+ + +SS A T+ + SSS+V S P SS+ + L S+ LS
Sbjct: 189 VSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248
Query: 269 XXXIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVP 448
L+SS S T + ++ S+ + ++S T+ + TSTS+ +
Sbjct: 249 STSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTIS 308
Query: 449 ASGPIPPEDKDVTNNKKKQRTA--SSAPKSS 535
+S ++ ++ SS+P SS
Sbjct: 309 SSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
Score = 28.7 bits (61), Expect = 0.87
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Frame = +2
Query: 104 NSSAPLKTASMKTTDNATSSSNVSMES--PQPSSARTVLCSTLLSGRXXXXXXXXXXXXX 277
+SS+P T+S ++ +++SSS S S SS+ + STL S
Sbjct: 279 SSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSS-------- 330
Query: 278 IGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASG 457
+SSP S + + ++ S P + +T+S++ + TS+ST +S
Sbjct: 331 -SFSSSPTSSSSTISSSSSS-PSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSS 388
Query: 458 PIP-PEDKDVTNNKKKQRTASSAPKSS 535
P ++ +SS+ KSS
Sbjct: 389 SSSRPASSSSHSSSLSSHKSSSSSKSS 415
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 428 STSTPVPASGPIPPEDKDVTNNKKKQRTASSAPK 529
S+STP PAS PP ++++K R+ +P+
Sbjct: 619 SSSTPTPASVLAPPSSASLSSSKDANRSVPESPR 652
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.50
Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 4/152 (2%)
Frame = +2
Query: 104 NSSAPLKTASMKTTDNATSS--SNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXX 277
++S+P T S+ + ++TSS S+ S SP S+ ST+LS
Sbjct: 583 STSSPSST-SLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSS 641
Query: 278 I--GLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPA 451
I G +S S +P + + + +SST +S+S+P+P+
Sbjct: 642 IISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPS 701
Query: 452 SGPIPPEDKDVTNNKKKQRTASSAPKSSWLMP 547
S + +N + +A SS +P
Sbjct: 702 SSSLVSTYSASLSNITHSSLSLTAMSSSSAIP 733
Score = 25.8 bits (54), Expect = 6.1
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +2
Query: 287 NSSPPSPTHNVP-AAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPI 463
+SS P + P ++ S P +TSS A STS+ P+S I
Sbjct: 472 SSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSII 531
Query: 464 PPEDKDVTNNKKKQRTASSAPKSS 535
V ++ T+SS+ SS
Sbjct: 532 SSPMTSVLSSSSSIPTSSSSDFSS 555
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Frame = +2
Query: 173 SMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXXIGLNSSPP-SPTHNVPAAMDSLPIP 349
+ME PQ + V ST S R N++ P T P S P P
Sbjct: 834 NMEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENTSAEPIENTSAPTP 893
Query: 350 TPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIPPEDKD 481
+ T A + STP P P+PP +D
Sbjct: 894 FEIANKQQATEPISAPF------ATETISTPAPVKPPVPPSRRD 931
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.5
Identities = 30/144 (20%), Positives = 58/144 (40%)
Frame = +2
Query: 104 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXXIG 283
+SS+P +++ TT ++SSS+ S S SS+ + S+ S
Sbjct: 140 SSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSS---SSSSSSSSSSSSSSSSSSSSSS 196
Query: 284 LNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPI 463
+SS S + +VP + + ++SS+++ S+ST +
Sbjct: 197 SSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVT 256
Query: 464 PPEDKDVTNNKKKQRTASSAPKSS 535
P T+++ TA+ A +S
Sbjct: 257 PSSSSSSTSSEVPSSTAALALNAS 280
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/85 (23%), Positives = 30/85 (35%)
Frame = +2
Query: 293 SPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIPPE 472
+PP P VP+ +PIPT +++ + S P P+ P P
Sbjct: 1031 APPIP---VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087
Query: 473 DKDVTNNKKKQRTASSAPKSSWLMP 547
+ K A PK S +P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVP 1112
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 325 GGDIVSWAWGAGVQSY 278
G I+SW+WG G +S+
Sbjct: 140 GSSILSWSWGLGFESF 155
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.6
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 5/148 (3%)
Frame = +2
Query: 107 SSAPLKTASMKTT--DNATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXXI 280
+SA ++S+ +T N+ +SS+++ S +++ T S++ S
Sbjct: 204 TSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTA 263
Query: 281 GLNSSPPSPT--HNVPAAM-DSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPA 451
++S S + +N + + S P TPL + +STTA TS ++
Sbjct: 264 ATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTA------TSASSTPLTSVNSTTTT 317
Query: 452 SGPIPPEDKDVTNNKKKQRTASSAPKSS 535
S P + N + SS P SS
Sbjct: 318 SASSTPLSSVSSANSTTATSTSSTPLSS 345
Score = 26.6 bits (56), Expect = 3.5
Identities = 26/111 (23%), Positives = 51/111 (45%)
Frame = +2
Query: 104 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRXXXXXXXXXXXXXIG 283
++SA +++ T+ N+T+S++VS +P +++ + S++ S
Sbjct: 380 STSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS----TPLSSANSTTATS 435
Query: 284 LNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTS 436
+S+P S ++ A S TPL + +STTA + T+TS
Sbjct: 436 ASSTPLSSVNSTTATSAS---STPLSSVNSTTATSASSTPLTSVNSTTATS 483
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.5
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 101 PNSSAPLKTASMKTTDNATSSSNVSMESPQ--PSSARTVLCSTLLSGRXXXXXXXXXXXX 274
P SS PL+ S TT ++S++ + SPQ P + + ST S +
Sbjct: 13 PTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPLSTPSSFQHGQTRLPPINCL 72
Query: 275 XIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTA 382
N P P H+ AA S +P AT ST A
Sbjct: 73 AEPFNR--PQPWHSNSAAPAS---SSPTSATLSTAA 103
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +2
Query: 293 SPPSPTHNVPAAMDSLPIPT--PLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIP 466
+PP+P +P A+ ++P+P+ P A ++ S+ VP+ P
Sbjct: 1477 APPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPA 1536
Query: 467 PEDKDVTNNKKKQRTASSAPKSSWLMPKD 553
P+ S +SS P++
Sbjct: 1537 PQHPSAAALSSAPADNSMPHRSSPYAPQE 1565
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 115 PAKDGQYEDDRQCDKFFECVDGVATTKLCPDGLVFDPTIRK 237
P Y DD ++ E V G T +C ++FD TIR+
Sbjct: 488 PTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 543 INQLLFGALEAVLCFFLLFVTSLSSG 466
I LE +LCFFL++ T+ S G
Sbjct: 47 IRDSFLSQLENILCFFLVYRTTYSFG 72
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 461 IPPEDKDVTNNKKKQRTASSAPKSSWLMPKD 553
+PPE +++ + +KQ+ K SWL +D
Sbjct: 162 LPPEHRNIWFDMEKQKKEELKNKHSWLYNED 192
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +1
Query: 349 DPSVCNIFYNCIEGEATEVKC 411
+P CN+ Y CIE + C
Sbjct: 176 EPVKCNLCYECIESDELRANC 196
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 546 GINQLLFGALEAVLCFFLLFVTSLSSGGIGPDAG 445
GI +GA +L F F S+ G PDAG
Sbjct: 480 GIYGACYGAFIIILVFITEFYVSIFPIGASPDAG 513
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -1
Query: 230 IVGSNTRPSGQSLVVATPSTHSKNLSHCLSSSYWPSLAGHLNWALAIA 87
I+ + PS S +V + L C + + ++ GH NW +A
Sbjct: 137 IISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVA 184
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 425 TSTSTPVPASGPIPPEDKDVTNNKKKQRTASSAPKSS 535
TSTSTP A+ P P V K + +++ A +S
Sbjct: 77 TSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTS 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,458
Number of Sequences: 5004
Number of extensions: 59151
Number of successful extensions: 291
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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