Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2375
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    29   0.44 
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   2.3  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    27   3.1  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   4.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   9.5  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   9.5  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +3

Query: 198 ALIASSVMALYRVPLHR---MKTARTHFHXVGTELELLRL--KYDVTGPSPEPLSNYLDA 362
           AL AS   A   VP  R   +    + +  V  +LE  ++  K D +G     L  Y DA
Sbjct: 15  ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73

Query: 363 Q-YYGVISIGTPPQSFXVVFDTGSSTFWVPSK 455
             Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 74  GGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 458 LFGRHPEGGGSGVEYHXERLRRRADTDHSVVLSIK 354
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 327 PSPEPLSNYLDAQYYGVISIGTPPQSFXVVFDTGSSTF 440
           P  +P  N  DA + GV+    PP      FD G+ T+
Sbjct: 339 PEDDPYYNEFDA-FLGVVQGRYPPSRILSKFDDGAKTY 375


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 171 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 269
           MGK+S+ + A IAS+ + ++  P +R      H
Sbjct: 1   MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 372 GVISIGTPPQSFXVVFDTGSSTFWVPSKKCHYTNIACLLHN-KYDSRKSKTYVANGT 539
           G  S+ T   +  +V +  SST  +PS+    + +  LL++  Y+ +   T V +GT
Sbjct: 644 GTSSLRTSQTTSTIVSNDSSSTASIPSQISRISQVNSLLNDYNYNRQSHITRVYSGT 700


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 300 LRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPP 398
           LR  Y VT P  + ++N L A+Y     I TPP
Sbjct: 18  LRSGYSVTAPVSKSMANVLWARYAST-RIKTPP 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,611
Number of Sequences: 5004
Number of extensions: 50936
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)