Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2372
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.1  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   1.1  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   2.6  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   2.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   3.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   5.9  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   5.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.8  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +1

Query: 79  FTFNLVTVSSLPVLFLVASVRIFYGI--IERIFRMCLE 186
           F F+L  + SL +LFL   +R+F  +  + R+F +CL+
Sbjct: 169 FLFSLSHLLSLAILFLPLLLRVFSTLSRLPRLFCLCLQ 206


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 200  MYYICSRHIRNILSIIP*KILTLATRKSTGRLETVTRLKVKHLFLNKQKTL 48
            M  +CS  ++N + IIP KI +L +        T+++   +H   NK+ +L
Sbjct: 1377 MEKLCSSCLKNNIEIIPDKINSLCSDCLKNPCATISKAVTQHNAYNKKLSL 1427


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 40  QLHNVFCLLRKRCFTFNLVTVSSLPVLFLVASVRIFYGIIER 165
           QL N+F L+R+R     L+  S+LP   +     I    IE+
Sbjct: 299 QLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEK 340


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 VLWPDGVGTTTLSISTTKQRA 314
           ++W +G+GTT     TTK+ A
Sbjct: 246 IIWENGIGTTETQEKTTKELA 266


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 262 PTG*VPPPCRFPPRSSEPASKN 327
           P+   PPP R   RS +P SKN
Sbjct: 45  PSNPPPPPTRLHDRSFKPVSKN 66


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -2

Query: 359  HSPSNMSYNYQFLLAGSLLRGGNRQGGGTYPVGPQNAQLPVKNNHR 222
            H   N S  Y+ ++ G L   G  + G        ++ +P+ +NH+
Sbjct: 1718 HEGQNSSTGYKDIVQGLLAENGVSEAGVDVMTSIVSSTIPIVSNHQ 1763


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 162 FDYSVKDPHTGDEKEHWETRDGDKV 88
           FDY   D    D  +HW  +D  KV
Sbjct: 150 FDYKSADAILSDLSKHWSAKDTFKV 174


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 108 SPSALSRRQCEDLLRNNR 161
           SP   +R  C+D ++NNR
Sbjct: 840 SPQVKNRMTCQDFIKNNR 857


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,546
Number of Sequences: 5004
Number of extensions: 39223
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)