Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2372
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    27   6.0  
01_01_0499 - 3675303-3675484,3676888-3676982,3677046-3677096,367...    27   6.0  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    27   7.9  
05_01_0504 + 4203628-4203723,4203817-4204254                           27   7.9  
04_04_0039 + 22316171-22316273,22317124-22317824,22317924-223180...    27   7.9  
01_02_0074 + 10869546-10871373,10871449-10872077                       27   7.9  
01_01_0256 - 2083973-2084816,2084922-2086093                           27   7.9  

>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 171 KYSFDYSVKDPHTGDEKEHWETRDGD 94
           K + DY++ + +T DE EH E  DG+
Sbjct: 143 KATDDYALNNLNTSDEAEHMEPTDGN 168


>01_01_0499 -
           3675303-3675484,3676888-3676982,3677046-3677096,
           3677191-3677270,3677423-3677593,3677836-3677937,
           3678092-3678244,3678392-3678523,3678702-3678788,
           3678987-3679126,3679246-3679660
          Length = 535

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 159 DYSVKDPHTGDEKEHWETRDGDKVKGKASL 70
           D S  DP+ GD   HW   +GD+   K  L
Sbjct: 119 DPSTPDPNGGDTPLHWAAYNGDRELAKLLL 148


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 362 SHSPSNMSYNYQFLLAGSLLRGGNRQGGGTYPVGPQNAQLP 240
           S  P N     + L AG   RG N +G  T   G QN+ LP
Sbjct: 525 SDLPMNTVSQAEDLYAGGASRGNNERGNATSTSG-QNSSLP 564


>05_01_0504 + 4203628-4203723,4203817-4204254
          Length = 177

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 54  LLFIKKEMLYL*PCHRL*SPSALSRRQCEDLLR 152
           LL +   +L L PCH     SA +RR+C   +R
Sbjct: 15  LLLLLAAVLLLHPCHAATEASAAARRECTYTVR 47


>04_04_0039 +
           22316171-22316273,22317124-22317824,22317924-22318010,
           22318361-22318420,22318971-22319912,22320678-22320723,
           22320889-22321010
          Length = 686

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 171 KYSFDYSVKDPHTGDEKEHWE---TRDGDKVKGKAS 73
           K S  + +K PH+G EK+  E   +   DK+K K +
Sbjct: 295 KISNSHRIKSPHSGKEKQSLELYVSSSSDKLKSKGA 330


>01_02_0074 + 10869546-10871373,10871449-10872077
          Length = 818

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 242 VVERFVARRGRYHHPVDFHHEAASQPVKTDSYNSCLKVSGCI--YVXNDXGLW 394
           VV R+     R    +D    AAS    TD+++  +KVS C   Y   D   W
Sbjct: 201 VVGRYAVNFVRGMQDIDGATTAASAAAATDAFSRPIKVSSCCKHYAAYDVDAW 253


>01_01_0256 - 2083973-2084816,2084922-2086093
          Length = 671

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 275 YHHPVDFHHEAASQPVKTDSYN 340
           YHH +  HH  A QP  T + N
Sbjct: 603 YHHVIQTHHHPAPQPAATVAGN 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,506,225
Number of Sequences: 37544
Number of extensions: 258455
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)