Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2370
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   235   3e-63
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   235   3e-63
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   2.9  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   6.7  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.9  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  235 bits (576), Expect = 3e-63
 Identities = 111/170 (65%), Positives = 129/170 (75%)
 Frame = +3

Query: 48  DNSXNVMRNLHIRKLCLNICVGESGDRLTRAXXXLEXLTGQXPVFSKARYTVRPFGIRRX 227
           + + N M+ L I KL LNI +GESGDRLTRA   LE L+GQ PVFSKARYT+R FGIRR 
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 228 EXIAXHCTXRGAKAEEILERGLKVREYELRRDNFSATGNXGFXIQEHIDXGIKYDPXIGI 407
           E IA H T RG KAEEILERGLKV+EYEL++ NFSATGN GF IQEHID GIKYDP IGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 408 YGLDFYVXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIIL 557
           YG+DFYV + RPG  VA RK + G+VG  H++  ED    F+QKYD ++L
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  235 bits (576), Expect = 3e-63
 Identities = 111/170 (65%), Positives = 129/170 (75%)
 Frame = +3

Query: 48  DNSXNVMRNLHIRKLCLNICVGESGDRLTRAXXXLEXLTGQXPVFSKARYTVRPFGIRRX 227
           + + N M+ L I KL LNI +GESGDRLTRA   LE L+GQ PVFSKARYT+R FGIRR 
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 228 EXIAXHCTXRGAKAEEILERGLKVREYELRRDNFSATGNXGFXIQEHIDXGIKYDPXIGI 407
           E IA H T RG KAEEILERGLKV+EYEL++ NFSATGN GF IQEHID GIKYDP IGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 408 YGLDFYVXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIIL 557
           YG+DFYV + RPG  VA RK + G+VG  H++  ED    F+QKYD ++L
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 587 LLIFLLCFAIK--YDTIIFLLEPLXSIFXCEAVGXSHFSCLTLSVCYVETWPAKXDVKVQ 414
           LL +L+   +   Y TII  L P  ++F         F   TLS+ Y++ +P      + 
Sbjct: 66  LLQYLVALVVVPFYSTIIKKLTPWFTVFTTWVGEEYFFFASTLSILYMDDFPTCAYFVIF 125

Query: 413 SINSNXGI 390
           SI+   GI
Sbjct: 126 SISFLLGI 133


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 458 CYVETWPAKXDVKVQSINSNXGIVLDTXVNVFLNPEAXI 342
           C V+TW  +   + +S N     ++D   N  L PE  +
Sbjct: 504 CIVDTWMLQHAPQSKSANIEEMFIVDANENQVLEPELMV 542


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 398 NWNLWTGLLRXTWPARFQRSTQK 466
           NW+    L R  WP  F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,925
Number of Sequences: 5004
Number of extensions: 34220
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)