Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2370
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048...   224   5e-59
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576...   224   5e-59
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656...   169   2e-42
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767...   149   2e-36
02_02_0196 + 7685933-7685961,7686086-7686284                           79   3e-15
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    29   2.3  
10_01_0304 - 3356541-3357518                                           27   9.2  
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613...    27   9.2  

>06_03_0409 -
           20503480-20503678,20504522-20504717,20504805-20504847,
           20505632-20505739,20505848-20505850
          Length = 182

 Score =  224 bits (547), Expect = 5e-59
 Identities = 110/167 (65%), Positives = 125/167 (74%)
 Frame = +3

Query: 60  NVMRNLHIRKLCLNICVGESGDRLTRAXXXLEXLTGQXPVFSKARYTVRPFGIRRXEXIA 239
           N MR + ++KL LNI VGESGDRLTRA   LE L+GQ PVFSKARYTVR FGIRR E IA
Sbjct: 9   NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68

Query: 240 XHCTXRGAKAEEILERGLKVREYELRRDNFSATGNXGFXIQEHIDXGIKYDPXIGIYGLD 419
            + T RG KA ++LE GLKV+EYEL R NFS TG  GF IQEHID GIKYDP  GIYG+D
Sbjct: 69  CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128

Query: 420 FYVXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIILN 560
           FYV L R G+ VA R+R   +VG  HR+T EDA K FQ KY+G+ILN
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175


>01_01_0745 +
           5769150-5769152,5769268-5769375,5769812-5769854,
           5769945-5770140,5770836-5771034
          Length = 182

 Score =  224 bits (547), Expect = 5e-59
 Identities = 110/167 (65%), Positives = 125/167 (74%)
 Frame = +3

Query: 60  NVMRNLHIRKLCLNICVGESGDRLTRAXXXLEXLTGQXPVFSKARYTVRPFGIRRXEXIA 239
           N MR + ++KL LNI VGESGDRLTRA   LE L+GQ PVFSKARYTVR FGIRR E IA
Sbjct: 9   NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68

Query: 240 XHCTXRGAKAEEILERGLKVREYELRRDNFSATGNXGFXIQEHIDXGIKYDPXIGIYGLD 419
            + T RG KA ++LE GLKV+EYEL R NFS TG  GF IQEHID GIKYDP  GIYG+D
Sbjct: 69  CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMD 128

Query: 420 FYVXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIILN 560
           FYV L R G+ VA R+R   +VG  HR+T EDA K FQ KY+G+ILN
Sbjct: 129 FYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175


>05_02_0095 +
           6564703-6564705,6564848-6564955,6565153-6565195,
           6565303-6565409,6566310-6566395,6566396-6566594
          Length = 181

 Score =  169 bits (411), Expect = 2e-42
 Identities = 92/169 (54%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
 Frame = +3

Query: 60  NVMRNLHIRKLCLNICVGESGDRLTRAXXXLEXLTGQXPVFSKARYTVRPFGIRRXEXIA 239
           N MR + ++KL LNI VGESGDRLTRA   LE L+GQ PVFSKARYTVR FGIRR E IA
Sbjct: 9   NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68

Query: 240 XHCTXRGAKAEEILERGLKVREYELRRDNF--SATGNXGFXIQEHIDXGIKYDPXIGIYG 413
            + T RG KA ++LE GLK+       DN   S T +         +   +YDP  GIYG
Sbjct: 69  CYVTVRGEKAMQLLESGLKIIRIV---DNLIPSVTRSTRAKRINLSNQCFRYDPSTGIYG 125

Query: 414 LDFYVXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIILN 560
           +DFYV L R G+ VA R+R   +VG  HR+T EDA K FQ KY+G+ILN
Sbjct: 126 MDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 174


>02_02_0195 +
           7676014-7676094,7676111-7676218,7676307-7676349,
           7676449-7676648
          Length = 143

 Score =  149 bits (361), Expect = 2e-36
 Identities = 76/120 (63%), Positives = 86/120 (71%)
 Frame = +3

Query: 27  RSKXXPKDNSXNVMRNLHIRKLCLNICVGESGDRLTRAXXXLEXLTGQXPVFSKARYTVR 206
           R +   +    N MR + ++KL LNI VGESGDRLTRA   LE L+GQ PVFSKARYTVR
Sbjct: 24  RVRVASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVR 83

Query: 207 PFGIRRXEXIAXHCTXRGAKAEEILERGLKVREYELRRDNFSATGNXGFXIQEHIDXGIK 386
            FGIRR E IA + T RG KA ++LE GLKV+EYEL R NFS TG  GF IQEHID GIK
Sbjct: 84  SFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143


>02_02_0196 + 7685933-7685961,7686086-7686284
          Length = 75

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 35/58 (60%), Positives = 42/58 (72%)
 Frame = +3

Query: 387 YDPXIGIYGLDFYVXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIILN 560
           YDP  GIYG+DFYV L R G+ VA R+R   +VG  HR+T EDA K FQ KY+G+ILN
Sbjct: 11  YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 68


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +1

Query: 313 CGVTTSPPRVIXASGFKNTLTXVSSTIPXLEFMDWTFTSXLAGQVST*HTESVRQEKWDX 492
           C  TT PPR++    FKN  T +  + P  E++D  F+      +S     SV    WD 
Sbjct: 69  CNNTTQPPRLL----FKNGTTEIIDS-PSTEYLDVMFSH----SISMKSNVSVYNMSWDA 119

Query: 493 PTAS 504
           P  S
Sbjct: 120 PGKS 123


>10_01_0304 - 3356541-3357518
          Length = 325

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 426 VXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIILNS 563
           V  G  G  V  R R+TGKV    RL   D   RF   +D + L +
Sbjct: 49  VGQGAFGVVVRARDRRTGKVVALKRLIGADEGGRFAPNFDALRLEA 94


>05_07_0095 -
           27659944-27660795,27660900-27661172,27661280-27661354,
           27661683-27661837,27661935-27662051,27662148-27662487
          Length = 603

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 584 LIFLLCFAIKYDTIIFLLEPLXSIFXCEAVG 492
           L+F+L F I Y T ++ L+   +IF  + +G
Sbjct: 434 LLFMLSFRICYSTYVYSLQKFSAIFPPQDIG 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,371
Number of Sequences: 37544
Number of extensions: 219122
Number of successful extensions: 376
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)