Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2370
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   256   9e-69
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   254   3e-68
Z83218-5|CAB05691.1|  352|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm rec...    28   6.2  
AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm rec...    28   6.2  
AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  256 bits (627), Expect = 9e-69
 Identities = 124/186 (66%), Positives = 141/186 (75%)
 Frame = +3

Query: 21  IKRSKXXPKDNSXNVMRNLHIRKLCLNICVGESGDRLTRAXXXLEXLTGQXPVFSKARYT 200
           I++     +  + NVMR L I+KLCLNICVGESGDRLTRA   LE LTGQ PVFSKARYT
Sbjct: 4   IEKQTEIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYT 63

Query: 201 VRPFGIRRXEXIAXHCTXRGAKAEEILERGLKVREYELRRDNFSATGNXGFXIQEHIDXG 380
           VR FGIRR E IA HCT RG KAEEILE+GLKV+EYEL ++NFS TGN GF +QEHID G
Sbjct: 64  VRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLG 123

Query: 381 IKYDPXIGIYGLDFYVXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIILN 560
           IKYDP IGIYG+DFYV L R G  +A R+R  G+VG  HR+  E++ K FQQKYDGIIL 
Sbjct: 124 IKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIILP 183

Query: 561 SKAK*K 578
            K K K
Sbjct: 184 PKPKVK 189


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  254 bits (623), Expect = 3e-68
 Identities = 123/179 (68%), Positives = 137/179 (76%)
 Frame = +3

Query: 60  NVMRNLHIRKLCLNICVGESGDRLTRAXXXLEXLTGQXPVFSKARYTVRPFGIRRXEXIA 239
           NVMR L I+KLCLNICVGESGDRLTRA   LE LTGQ PVFSKARYTVR FGIRR E IA
Sbjct: 17  NVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIA 76

Query: 240 XHCTXRGAKAEEILERGLKVREYELRRDNFSATGNXGFXIQEHIDXGIKYDPXIGIYGLD 419
            HCT RG KAEEILE+GLKV+EYEL ++NFS TGN GF +QEHID GIKYDP IGIYG+D
Sbjct: 77  VHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMD 136

Query: 420 FYVXLGRPGFNVAHRKRKTGKVGXPHRLTXEDAXKRFQQKYDGIILNSKAK*KYQ*IKR 596
           FYV L R G  V+ R+R  G++G  HR+  E+  K FQQKYDGIIL  K K K    +R
Sbjct: 137 FYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIILPPKPKVKKNFFRR 195


>Z83218-5|CAB05691.1|  352|Caenorhabditis elegans Hypothetical
           protein C31A11.9 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 590 YLLIFLLCFAIKYDTIIFLLEPLXSIF 510
           YL++F+ CF I Y  +  L++P+   F
Sbjct: 43  YLMLFISCFEITYSLLDVLVQPMFHSF 69


>AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform b protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 590 YLLIFLLCFAIKYDTIIFLLEP 525
           YLLI+  CF+I Y  +  ++EP
Sbjct: 42  YLLIYFCCFSILYSILDIIVEP 63


>AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform a protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 590 YLLIFLLCFAIKYDTIIFLLEP 525
           YLLI+  CF+I Y  +  ++EP
Sbjct: 42  YLLIYFCCFSILYSILDIIVEP 63


>AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical
           protein Y9C9A.5 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 590 YLLIFLLCFAIKYDTIIFLLEP 525
           YLLI+  CF++ Y  +  ++EP
Sbjct: 42  YLLIYFCCFSMLYSILYIIVEP 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,257
Number of Sequences: 27780
Number of extensions: 194003
Number of successful extensions: 411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)