Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2365
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   1.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   1.4  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    25   1.8  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   3.1  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   3.1  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    24   5.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    24   5.5  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    24   5.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    23   7.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    23   7.3  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      23   7.3  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    23   9.6  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    23   9.6  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    23   9.6  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 291 PTPEPGALSPISQHALYTRPVAPALPEPPY--TILAPN 184
           P P PG +      A  T P AP +P  P+  TI A N
Sbjct: 290 PPPPPGMVMASPSPAAATIPGAPVMPNIPFYQTINAQN 327


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 296 PPRLPSRARSHRSLSMRSTRVLSLRHYRSHPTRY*HPIH 180
           P  LPS    H+ +S +   + +L   + HP R  HPIH
Sbjct: 167 PVSLPSPNLPHQPIS-KPPVIPNLPKLQVHPNRLPHPIH 204


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 252 HALYTRPVAPALPEPP 205
           +A Y RPVAP +P+ P
Sbjct: 137 NAEYNRPVAPVIPDAP 152


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  SRVFCAGSILKSIDLLRCIYLLEESD 136
           S VF    +L S+DL  CIY++ E +
Sbjct: 198 SLVFYLEMLLDSLDLRNCIYVVFEDE 223


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 206 PTRY*HPIHEPNSTTF 159
           P  Y +PIHEPN   F
Sbjct: 49  PNMYKNPIHEPNGKKF 64


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 282 EPGALSPISQHALYTRP 232
           E GAL P S HAL   P
Sbjct: 38  EEGALPPYSDHALVNNP 54


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 234 PVAPALPEPPYTILAP 187
           P AP++P+PP   +AP
Sbjct: 599 PEAPSVPQPPVAPVAP 614


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 282 EPGALSPISQHALYTRP 232
           E GAL P S HAL   P
Sbjct: 38  EEGALPPYSDHALVNNP 54


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 205 LHDISTQYTNLTVPLFTDRTIRIITFL 125
           LHD  TQ+ NL   L T   +  I FL
Sbjct: 309 LHDSLTQFPNLDFILKTTALVLFIIFL 335


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 291  PTPEPGALSPISQHALYTRPVAPALPEPP 205
            P P P    P+ + ++   PV P    PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -1

Query: 297  AAPTPEPGALSPISQHALYTRPV-AP--ALPEPPYTILAP 187
            A P P P    P+ + ++   PV AP  A P P  ++ AP
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 297 AAPTPEPGALSPISQHALYTRPVAPALPEPPYTILAPNT 181
           A+P       S I   ++Y+  V    P  PYT + P T
Sbjct: 427 ASPYYNQNINSSIDYSSIYSNDVPAIPPNVPYTFVDPYT 465


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 229 RSGTTGATLHDISTQYTNLTVPL 161
           R G    T H+I+  YT+ ++P+
Sbjct: 130 RPGCLKFTTHEINVSYTDTSIPV 152


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 92  ILECSRHRIPLTGTRT 45
           ++EC RHR+P    +T
Sbjct: 330 LVECPRHRLPKLNVKT 345


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 128 PPTSRCTVTNLSILECSRHRIPLTGT 51
           PPT   T+T  + LE     +PLT T
Sbjct: 210 PPTPASTLTAEAALEDCESNLPLTET 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,094
Number of Sequences: 5004
Number of extensions: 22637
Number of successful extensions: 84
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)