Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2365
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0981 + 9931542-9931606,9931779-9933105 29 0.89
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 28 1.2
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 28 1.6
09_02_0104 - 4329068-4329926,4330967-4331811 27 2.1
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684... 27 2.7
03_02_0390 + 8056006-8057502 27 2.7
02_01_0302 - 2021221-2023305 27 2.7
02_02_0472 - 10725234-10726119,10726201-10726808 27 3.6
01_02_0031 + 10364487-10365407 27 3.6
12_01_0342 + 2634678-2635937 26 4.7
12_01_0334 - 2573375-2574634 26 4.7
08_01_0281 - 2290348-2290637,2290846-2291032 26 4.7
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 26 4.7
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 26 4.7
03_05_0543 - 25404630-25405408,25405461-25405605 26 4.7
02_04_0539 - 23745936-23746097,23746661-23747566 26 4.7
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360 26 4.7
08_02_0610 + 19307537-19308011,19308187-19310846 26 6.3
05_01_0044 + 307711-307883,308001-308063,308200-308316,308558-30... 26 6.3
11_01_0066 - 536281-537196,537397-537452 25 8.3
09_04_0506 - 18188785-18190599 25 8.3
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 25 8.3
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 25 8.3
06_03_1150 + 28022633-28023374,28023501-28023565 25 8.3
05_05_0272 - 23738514-23738817,23739382-23740748 25 8.3
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 212 SHPTRY*HPIHEPNSTTFH*SYNPYYHFPP 123
S PT + H + +H YNPYYH P
Sbjct: 127 STPTHFWEGGHGAHPEPYHQPYNPYYHQEP 156
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 297 AAPTPEPGALSPISQHALYTRPVAPALPEPP 205
AAP P P SP+ +H + P P +P P
Sbjct: 64 AAPLPAPPTPSPVPEHLHHHPPPPPPVPPCP 94
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 297 AAPTPEPGALSPISQHALYTRPVAPALPEPPYTILAP 187
A P P P A S ++ RP +P P PP+T P
Sbjct: 89 ADPMPTPAASSALAPATSSPRPASP--PTPPWTTAPP 123
>09_02_0104 - 4329068-4329926,4330967-4331811
Length = 567
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 180 VYWVLISCRVAPVVPERQDACRAHAERSVRARPARESG 293
V W LI C P +P+ + R+ A S +A E G
Sbjct: 520 VNWALIRCATPPDIPKPVEIPRSVASTSQKATTTAEKG 557
>07_03_0276 +
16166528-16166796,16166824-16167291,16168048-16168414,
16168565-16168587,16170094-16170385
Length = 472
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 296 PPRLPSRAR---SHRSLSMRSTRVLSLRHYRSHPTR 198
PP P+ R SHR++S ++ LRH + PTR
Sbjct: 166 PPLSPNSLRFLESHRNVSDEDYELIELRHNNNIPTR 201
>03_02_0390 + 8056006-8057502
Length = 498
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 180 VYWVLISCRVAPVVPERQDACRAHAERSVR 269
V W LI C PVVP++ A ++ +
Sbjct: 419 VDWALIRCVAPPVVPDKDSAAAGAGDKKAK 448
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 291 PTPEPGALSPISQHALYTRPVAPALPEPPYTILAP 187
P+P + +P S + P P+ P PP T P
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPP 553
>02_02_0472 - 10725234-10726119,10726201-10726808
Length = 497
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 180 VYWVLISCRVAPVVPERQDACRAHAERSVRARPARESGRP 299
V W L+ + P +PE A A RS AR + G P
Sbjct: 434 VNWALVRSAMPPYIPEADVAAAAVDCRSPLARATQGGGTP 473
>01_02_0031 + 10364487-10365407
Length = 306
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = -1
Query: 294 APTPEPGALSPISQHALYTRPVAPALPEPPYTILAPNTRT*QYHF 160
AP P P + P++ + P P PP N Q HF
Sbjct: 180 APPPPPAPMLPLAPPPTHVTPAMPLSSMPPPAFHGMNHHHHQNHF 224
>12_01_0342 + 2634678-2635937
Length = 419
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 250 CALHASCRSGTTGATLHDISTQYTNLTVPL 161
C L+ + +G A L+ ++ + T+ TVPL
Sbjct: 59 CLLYTTAAAGPRAAVLYSLADKTTSYTVPL 88
>12_01_0334 - 2573375-2574634
Length = 419
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 250 CALHASCRSGTTGATLHDISTQYTNLTVPL 161
C L+ + +G A L+ ++ + T+ TVPL
Sbjct: 59 CLLYTTAAAGPRAAVLYSLADKTTSYTVPL 88
>08_01_0281 - 2290348-2290637,2290846-2291032
Length = 158
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 296 PPRLPSRARSHRSLSMRSTRVLSLRHYR 213
PP+ P A +H+ L R + LRH R
Sbjct: 104 PPQPPFAAAAHQRLPARKPHIRPLRHQR 131
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 291 PTPEPGALSPISQHALYTRPVAPALPEPP 205
P P P A P +H P P LP PP
Sbjct: 72 PPPPPPAPRPPRRHHRIPPPPPPLLPTPP 100
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -1
Query: 294 APTPE---PGALSPISQHALYTRPVAPALPEP 208
AP PE PG P+ +H VAP LP P
Sbjct: 53 APAPETHRPGIRHPVPRHHRKRPHVAPPLPPP 84
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 294 APTPEPGALSP-ISQHALYTRPVAPALPEP 208
AP P P L+P +SQ L R AP +PEP
Sbjct: 159 APAPAPAPLTPALSQRFLAERRPAP-VPEP 187
>02_04_0539 - 23745936-23746097,23746661-23747566
Length = 355
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 74 AGSILKSIDLLRCIYLLEESDNTDCTISEKWYC*VRVL 187
AG+ILKSID+ I+ E D D + C R++
Sbjct: 153 AGTILKSIDMKCIIHCPERFDTQDKLAEHRNLCRFRIV 190
>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
Length = 425
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Frame = -1
Query: 279 PGALSPISQH-------ALYTRPVAPALPEPPYTIL 193
PG LSP+ ++ A+ T P PA+P PP ++
Sbjct: 211 PGQLSPLEEYIRSQYPSAVETTPPPPAVPAPPSDVI 246
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 298 GRPDSRAGRALTDLSACALHASCRSGTTGAT 206
GRP RA +A ACA + + T+G T
Sbjct: 916 GRPPLRAPQARAAAPACAARGAAAAATSGRT 946
>05_01_0044 +
307711-307883,308001-308063,308200-308316,308558-309359
Length = 384
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 220 TTGATLHDISTQYTNLTVPLFTDRTIRIITFLQQV 116
T ++++S +YT+ TV T ++ ++TF V
Sbjct: 81 TITMNMYNVSLKYTSATVASATSNSVPVVTFFLAV 115
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 291 PTPEPGALSPISQHALYTRPVAPALPEPPYTILAP 187
P P P A P ++ T P +PA P PP T P
Sbjct: 207 PRPLPPASPP--PPSIATPPPSPASPPPPSTATPP 239
>09_04_0506 - 18188785-18190599
Length = 604
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 291 PTPEPGALSPISQHALYTRPVAPALPEPPYTILAP 187
P P P +P+ PVA A P PP+ + P
Sbjct: 118 PAPVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQP 152
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1
Query: 285 PEPGALSPISQHALYTRPVAPALPEPPYTILAPNTR 178
P P P+ QH PALP P T P+ +
Sbjct: 942 PLPEGPPPLRQHTSSALQAQPALPSGPQTSQQPSAQ 977
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 297 AAPTPEPGA-LSPISQHALYTRPVAPALPEPP 205
A P P P + +SP SQ A P APA P PP
Sbjct: 130 AFPFPFPSSPVSPPSQ-ASPASPAAPAPPSPP 160
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 297 AAPTPEPGA-LSPISQHALYTRPVAPALPEPP 205
A P P P + +SP SQ A P APA P PP
Sbjct: 130 AFPFPFPSSPVSPPSQ-ASPASPAAPAPPSPP 160
>05_05_0272 - 23738514-23738817,23739382-23740748
Length = 556
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 282 EPGALSPISQHALYTRPVAPALPEPP 205
E ++S + ++A + P +PA+PEPP
Sbjct: 292 EAKSVSAVIRYAGSSTPPSPAVPEPP 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,531,755
Number of Sequences: 37544
Number of extensions: 165064
Number of successful extensions: 660
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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