Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2363
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...   101   6e-23
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    41   1e-04
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    40   3e-04
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    38   0.001
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    38   0.001
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    27   2.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.4  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score =  101 bits (243), Expect = 6e-23
 Identities = 50/93 (53%), Positives = 62/93 (66%)
 Frame = +1

Query: 220 NLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNFXLIKVEGKVGXRMEDSV 399
           NL + A T+LGSKVV K H   A I           + +DV+F LIKV+GKVG  ++D+ 
Sbjct: 166 NLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTK 225

Query: 400 LVRGVVVDKTMSHPQXPKVLRNVKLAILTCPFE 498
           LV+GVVVDK MSHPQ P  + N K+AILTCPFE
Sbjct: 226 LVKGVVVDKDMSHPQMPHRIENAKIAILTCPFE 258



 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +2

Query: 83  QASNLLDKGIHPIRIADGYDYGCR 154
           QA  L+DKGIHPIRIADGY+  C+
Sbjct: 121 QAEALIDKGIHPIRIADGYEKACQ 144


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = +1

Query: 214 RENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNFXLIKVEGKVGXRMED 393
           R+ L K A T + SK++        ++           +  D+N  +I ++   G  MED
Sbjct: 156 RDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTL---DQEDLNENMIGIKKVPGGAMED 212

Query: 394 SVLVRGVVVDKTMSH---PQXPKVLRNVKLAILTCPFE 498
           S+LV+GV   KT S+    Q PK  +N K+  L    E
Sbjct: 213 SLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELE 250


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = +1

Query: 223 LIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNFXL---IKVEGKVGXRMED 393
           + +   T +G+K+V +   LM  +               +   +    +VE   G  +E 
Sbjct: 150 MFRLIRTCIGTKLVARWSDLMCHLALRAVRTVASTSNGRMEIDIKRYARVEKVPGGEIES 209

Query: 394 SVLVRGVVVDKTMSHPQXPKVLRNVKLAILTCPFE 498
           S ++ GV+++K ++HP+  + + N ++ +L CP E
Sbjct: 210 SCVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLE 244


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 22/95 (23%), Positives = 42/95 (44%)
 Frame = +1

Query: 214 RENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNFXLIKVEGKVGXRMED 393
           RE L+  A T+L +K+  K    +A             +   ++  ++++         D
Sbjct: 143 REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPD-EPIDLHMVEIMKMQNRSASD 201

Query: 394 SVLVRGVVVDKTMSHPQXPKVLRNVKLAILTCPFE 498
           + L+RG+++D    HP  PK ++N  + IL    E
Sbjct: 202 TQLIRGLLLDHGARHPDMPKQVKNAYILILNVSLE 236


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/101 (26%), Positives = 48/101 (47%)
 Frame = +1

Query: 178 ASVKLSQSTSXTRENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNFXLI 357
           +S+  S   +  R +L   A TTL SK++ +     A++              D N  +I
Sbjct: 140 SSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRLKGSTNLD-NIQII 198

Query: 358 KVEGKVGXRMEDSVLVRGVVVDKTMSHPQXPKVLRNVKLAI 480
           K+   +G +++DS L  G +++KT+     PKV+ N  + I
Sbjct: 199 KI---LGGKLDDSFLDEGFILNKTIG-VNCPKVMENANILI 235


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +1

Query: 205 SXTRENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNFXLIKVEGKV--- 375
           S  +E+LI  A T++ SK++       + +            ++      +K    +   
Sbjct: 147 SLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAH 206

Query: 376 GXRMEDSVLVRGVVVDKTMSHPQXPKVLRNVKLAIL 483
           G    +SVLV+G  ++ T++       ++N K+A+L
Sbjct: 207 GKSSRESVLVKGYALNCTIASQAMKTRVQNAKIAVL 242


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 402 KNRIFHASSNFPLHLNQXEIH 340
           K++ +H SS F LH+ + E H
Sbjct: 492 KHKYWHLSSGFHLHITRFEAH 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,667
Number of Sequences: 5004
Number of extensions: 31277
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)