Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2363
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 108 3e-24
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 46 2e-05
10_08_0620 - 19321612-19323237 38 0.005
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 37 0.014
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 36 0.025
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 36 0.025
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 33 0.13
08_02_0744 - 20659326-20659580,20659748-20660005,20660103-206615... 29 2.8
12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379 27 8.7
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 108 bits (260), Expect = 3e-24
Identities = 51/94 (54%), Positives = 65/94 (69%)
Frame = +1
Query: 217 ENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNFXLIKVEGKVGXRMEDS 396
E L++ MTTL SK+V +C R +AEI E +DVN LIKVEGKVG ++ED+
Sbjct: 159 EPLVQTCMTTLSSKIVNRCKRTLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDT 218
Query: 397 VLVRGVVVDKTMSHPQXPKVLRNVKLAILTCPFE 498
LV G++VDK MSHPQ PK + + K+AILTCPFE
Sbjct: 219 ELVYGIIVDKDMSHPQMPKRIEDAKIAILTCPFE 252
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2
Query: 83 QASNLLDKGIHPIRIADGYDYGCRPGTD 166
QA LL++GIHPIRIA+GY+ R D
Sbjct: 115 QAEKLLERGIHPIRIAEGYELASRIAFD 142
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +1
Query: 214 RENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDV-NFXLIKVEGKVGXRME 390
R++L+K A T L SKVV + L++ + D+ + I+V K+G ++
Sbjct: 154 RDSLVKSASTALNSKVVSQYSSLLSPLAVDAALSVVDPAHPDLLDLRDIRVVKKLGGTVD 213
Query: 391 DSVLVRGVVVDKTMSHPQ-XPKVLRNVKLAIL 483
D+ L+RG++ DK SH P + N K+A++
Sbjct: 214 DTELIRGLIFDKKASHAAGGPTRVENAKIAVI 245
>10_08_0620 - 19321612-19323237
Length = 541
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +1
Query: 214 RENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXX-ETRDVNFXLIKVEGKVGXRME 390
R+ L+K A T L SKVV + L++ + ++ I+V K+G ++
Sbjct: 158 RDALVKSASTALNSKVVSQYSTLLSPLAVDAALAVVDPAHPYLLDLRDIRVVKKLGCTVD 217
Query: 391 DSVLVRGVVVDKTMSH-PQXPKVLRNVKLAIL 483
D+ L+RG+V++K SH P + + K+A++
Sbjct: 218 DTELIRGLVLNKKASHVAGGPTRIGDAKIAVI 249
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/89 (28%), Positives = 41/89 (46%)
Frame = +1
Query: 214 RENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNFXLIKVEGKVGXRMED 393
R +L+ AMTTL SK++ + A + N I++ K G ++D
Sbjct: 126 RSDLMNIAMTTLSSKILSQDKEYFAGLAVDAVLRLKG----STNLEAIQILKKTGGSLKD 181
Query: 394 SVLVRGVVVDKTMSHPQXPKVLRNVKLAI 480
S L G ++DK + Q PK + N K+ +
Sbjct: 182 SFLDEGFILDKKIGLGQ-PKRIENAKILV 209
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 35.9 bits (79), Expect = 0.025
Identities = 26/104 (25%), Positives = 47/104 (45%)
Frame = +1
Query: 169 ILTASVKLSQSTSXTRENLIKXAMTTLGSKVVVKCHRLMAEIXXXXXXXXXXXETRDVNF 348
+L ++ ++ R +L+ AMTTL SK++ + AE+ N
Sbjct: 134 LLERTMDNKENIDKFRSDLMNIAMTTLSSKILSQDKEYFAELAVDAVLRLKG----STNL 189
Query: 349 XLIKVEGKVGXRMEDSVLVRGVVVDKTMSHPQXPKVLRNVKLAI 480
I++ G ++DS L G ++DK + Q PK + N K+ +
Sbjct: 190 EAIQILKIPGGSLKDSFLDEGFILDKKIGLGQ-PKRIENAKILV 232
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +1
Query: 355 IKVEGKVGXRMEDSVLVRGVVVDKTMSHP-QXPKVLRNVKLAILTCPFE 498
IKVE G ++EDS +++GV+++K + P + + + N ++ +L CP E
Sbjct: 200 IKVEKVPGGQLEDSKVLKGVMINKDVVAPGKMRRKIVNPRIILLDCPLE 248
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 355 IKVEGKVGXRMEDSVLVRGVVVDKTMSHP-QXPKVLRNVKLAILTCPFE 498
IKVE G ++EDS +++GV+ +K + P + + + N ++ +L CP E
Sbjct: 200 IKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDCPVE 248
>08_02_0744 -
20659326-20659580,20659748-20660005,20660103-20661575,
20661677-20661835,20661948-20662074,20662155-20662486,
20662574-20663383,20663772-20664110,20664187-20664340,
20664427-20665143,20665699-20665967
Length = 1630
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 355 IKVEGKVGXRMEDSVLVRGVVVDKTMSHPQXPKVLRNVKLAIL 483
+KV+ DS LVRGVV K + H + N KL IL
Sbjct: 316 VKVKCLASGDPSDSNLVRGVVCSKNVKHKRMASEHVNAKLLIL 358
>12_01_0987 - 10016203-10017165,10017346-10018180,10019532-10020379
Length = 881
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 396 RIFHASSNFPLHLNQ 352
R+FH+ SNFP HL +
Sbjct: 352 RLFHSDSNFPTHLEE 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,978,857
Number of Sequences: 37544
Number of extensions: 222399
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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