Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2362
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 380 e-107
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 219 4e-58
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 207 1e-54
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 128 6e-31
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 81 2e-16
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 80 3e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 2e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 7e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 3e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.022
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.069
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.37
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.48
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 1.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.5
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.5
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 6.0
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 7.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 380 bits (936), Expect = e-107
Identities = 184/227 (81%), Positives = 194/227 (85%)
Frame = +1
Query: 1 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 180
EHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV
Sbjct: 100 EHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGV 159
Query: 181 SHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAEREIVRDIKEKLCYV 360
+HTVPIYEGYALPHAI MKIL ERGY+F+TTAEREIVRDIKEKLCYV
Sbjct: 160 THTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYV 219
Query: 361 ALDFEQEMATAASSSSLEKSYELPDGXVITIGNERFRCPXALFQPSFLGMEACGIHETTY 540
ALDFEQE+ TAA SSSLEKSYELPDG VITIGNERFR P ALFQPS LG+E GIHE TY
Sbjct: 220 ALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATY 279
Query: 541 NSIMKCDVDIRXDLYANTVLSGGTTMYPGIXDRMQXEITALAPSTME 681
NSIMKCDVDIR DLY N V+SGGTTMYPGI DRMQ EI ALAPS+M+
Sbjct: 280 NSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMK 326
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 219 bits (534), Expect = 4e-58
Identities = 103/218 (47%), Positives = 142/218 (65%)
Frame = +1
Query: 10 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 189
+LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHI 162
Query: 190 VPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAEREIVRDIKEKLCYVALD 369
VP+YE L H + + +L +GY+F TA+ E VR++KEKLCYV+ D
Sbjct: 163 VPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYD 222
Query: 370 FEQEMATAASSSSLEKSYELPDGXVITIGNERFRCPXALFQPSFLGMEACGIHETTYNSI 549
E + + ++ L ++Y LPDG VI +G+ER+ CP LFQP +G E G+ E +++I
Sbjct: 223 LELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTI 282
Query: 550 MKCDVDIRXDLYANTVLSGGTTMYPGIXDRMQXEITAL 663
DVDIR LY VLSGG++MY G+ R++ EI L
Sbjct: 283 QAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 207 bits (506), Expect = 1e-54
Identities = 98/222 (44%), Positives = 139/222 (62%)
Frame = +1
Query: 1 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 180
EHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG+
Sbjct: 105 EHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGL 164
Query: 181 SHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAEREIVRDIKEKLCYV 360
+H+VPIY+G+++P AI L + G+ ++AE+EIVR+IKEK CYV
Sbjct: 165 THSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYV 224
Query: 361 ALDFEQEMATAASSSSLEKSYELPDGXVITIGNERFRCPXALFQPSFLGMEACGIHETTY 540
A DF E+ + +Y+LPD IT+G E F P LF P +G EA G+H +
Sbjct: 225 ASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLF 284
Query: 541 NSIMKCDVDIRXDLYANTVLSGGTTMYPGIXDRMQXEITALA 666
SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++
Sbjct: 285 KSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAIS 326
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 128 bits (310), Expect = 6e-31
Identities = 83/233 (35%), Positives = 117/233 (50%), Gaps = 15/233 (6%)
Frame = +1
Query: 1 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGI 156
+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG
Sbjct: 123 DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGT 182
Query: 157 VLDSGDGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGY--SFTTTAEREIV 330
V+DSGDGV+H +P+ EGY + +I +L +R S TAER
Sbjct: 183 VVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER--- 239
Query: 331 RDIKEKLCYVALDFEQEMA--TAASSSSLEKSYELPDG--XVITIGNERFRCPXALFQPS 498
IKE+ CYV D +E + L+ + E G I +G ERF P F P
Sbjct: 240 --IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPE 297
Query: 499 FLGME-ACGIHETTYNSIMKCDVDIRXDLYANTVLSGGTTMYPGIXDRMQXEI 654
+ + E N + +D+R LY N VLSGG+T++ +R+Q ++
Sbjct: 298 IASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDL 350
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 80.6 bits (190), Expect = 2e-16
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Frame = +1
Query: 298 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGXVITIGNERFRCP 477
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 478 XALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRXDLYANTVLSGGTTMYPGI 630
LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 631 XDRMQXEITALA 666
+R+Q E+ LA
Sbjct: 360 SERLQAEVQRLA 371
Score = 52.0 bits (119), Expect = 8e-08
Identities = 21/76 (27%), Positives = 44/76 (57%)
Frame = +1
Query: 1 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 180
E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 101 EYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDN 160
Query: 181 SHTVPIYEGYALPHAI 228
+ P+ +G + I
Sbjct: 161 ASVTPVVDGLIIRKGI 176
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 79.8 bits (188), Expect = 3e-16
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 20/196 (10%)
Frame = +1
Query: 154 IVLDSGDGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAEREIVR 333
+V+DSG +H +P+ + A+ ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVN 216
Query: 334 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GXVITI 453
+IKE +CYV+ +F+++M S LE Y LPD V+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 454 GNERFRCPXALFQPSFLGMEACGIHETTYNSIMKCDVDIRXDLYANTVLSGGTTMYPGIX 633
NERF P LF PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 634 DRMQXEITALAPSTME 681
R+ E+ +LAP+ E
Sbjct: 337 KRLSSELRSLAPANWE 352
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.7 bits (148), Expect = 2e-11
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Frame = +1
Query: 1 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGD 174
EHP+ +TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 175 GVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXMKILTERGYSFTTTAEREIVRDIKEKLC 354
SH +P+ G + +K+ + SF + C
Sbjct: 175 AASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHC 234
Query: 355 YVALDFEQEMATAASSSSLEK 417
+V+ D+ ++A A LE+
Sbjct: 235 HVSSDYTHDIAHALDRDILER 255
Score = 48.8 bits (111), Expect = 7e-07
Identities = 20/70 (28%), Positives = 41/70 (58%)
Frame = +1
Query: 460 ERFRCPXALFQPSFLGMEACGIHETTYNSIMKCDVDIRXDLYANTVLSGGTTMYPGIXDR 639
E+ R P +F PS +G++ GI E + + + ++ + L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 640 MQXEITALAP 669
++ E+T++ P
Sbjct: 654 IKRELTSIMP 663
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.1 bits (144), Expect = 7e-11
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +1
Query: 1 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 180
EHP+L+TE NP NR K + MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 98 EHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAER 157
Query: 181 SHTVPIYEGYAL 216
S IY+G+ L
Sbjct: 158 SSVSAIYDGFVL 169
Score = 46.4 bits (105), Expect(2) = 3e-09
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 520 GIHETTYNSIMKCDVDIRXDLYANTVLSGGTTMYPGIXDRMQXEITALAPST 675
GI + N I +CDVDIR L N ++ GGT++ G R+Q E++ L P +
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS 377
Score = 30.3 bits (65), Expect(2) = 3e-09
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 391 AASSSSLEKSYELPDGXVITIGNERFRCPXALFQP 495
++ ++ E +E PDG + G ER++ P LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 4 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 183
+PV L +RE TQ FE P +A + ++ LYA G G+V+D G +
Sbjct: 147 YPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKT 206
Query: 184 HTVPIYEG 207
PI +G
Sbjct: 207 DITPILDG 214
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.022
Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Frame = +2
Query: 92 PPCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTKDTHSPTPSCVWTXPVXXX 259
PP PS P P +PP + P + P P P P+ PV
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 260 XXXXXXXXXXXXXXXXXXXXGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTV 439
G + SR+ A+ + S++ P A PS +L + +
Sbjct: 492 AELPQQDGRANLMASIRASGGMDLLKSRKVSASPSVASTKTSNPPVEAPPSNNLMD--AL 549
Query: 440 XSSLSETKDSVAQ 478
S+L++ K VAQ
Sbjct: 550 ASALNQRKTKVAQ 562
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.069
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 95 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 229
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 92 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 229
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 92 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 229
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 92 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 229
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 71 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 229
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 71 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 229
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 83 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 229
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 116 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 220
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 326 SFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVXSSLSETKDSVAQXLSSNP 496
+F +R S A SS + P +P+AP+R PTV +S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 116 PCSRCTRPVVPPVSCWTPATVSPTPCPST 202
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 92 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 199
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 110 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWTXPV 250
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 13 LLTEAPLNPKANREKMTQIMFETFN 87
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 132 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLXRSRPHRLPHEDPH 284
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 326 SFVTSRRSCATSLLTSSR--KWPPLHPAAPSRSLTNFPTVXSSLSETKDSVAQXLSSN 493
S V+S A S L S+ + PPL P P S + + ++ S++ + A LSS+
Sbjct: 156 SIVSSSYGDAPSYLAPSKPNRSPPLKPEDPFASFNSSASAIAAASKSAAASASALSSD 213
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 450 SDDXTVGKFVRLLEGAAGCSGGHFLLEVKSDVAQLLL 340
+D VG+ L+ GAAG S GHF EV + + +LL
Sbjct: 350 ADSTFVGRAASLV-GAAGQSQGHF-TEVLNGIGTILL 384
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 27 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 176
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,797
Number of Sequences: 5004
Number of extensions: 56819
Number of successful extensions: 269
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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