Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2361
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    46   5e-06
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   9.7  

>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +3

Query: 285 NNWHWTEKNAGPWSKDRLKXLFSDLKIAQNGIVCSITEVEKVDGEASANXTKGKLIFFYX 464
           NNWHWT K+   WS +        ++ ++      IT+V   +G+   +  K K+I  + 
Sbjct: 9   NNWHWTSKDCRVWSHEYFNKELPKIQASEGPTSARITQVNSCEGDVDVSMRKRKVITIF- 67

Query: 465 WDIKVEM 485
            D+K++M
Sbjct: 68  -DLKIQM 73


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 315 RRFSPSSASCSHXLRP 268
           RRFSP+S SC H   P
Sbjct: 176 RRFSPASNSCCHSGAP 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,519
Number of Sequences: 5004
Number of extensions: 28482
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)