Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2361
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847     85   5e-17
06_03_1305 + 29197615-29197779,29198621-29198674,29198781-291988...    31   0.61 
07_01_0325 + 2275922-2276013,2276467-2276500,2276810-2276932,227...    28   5.6  
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53...    27   7.5  
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208...    27   9.9  

>08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847
          Length = 426

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = +3

Query: 219 MAXWGEGDPRWIVEXRPDATXVNNWHWTEKNAGPWSKDRLKXLFSDLKI--AQNGIVCSI 392
           MA +GEGD RWIV+ R D T V+NWHW E++   WS+ RL  L + L +   + G+    
Sbjct: 1   MAKYGEGDARWIVQERADGTNVHNWHWAERDCLEWSRSRLTSLLAGLPVLSGEGGLALRT 60

Query: 393 TEVEKVDGEASANXTKGKLI 452
           T ++K+DGEA  N  KGK+I
Sbjct: 61  TALDKLDGEAYVNIRKGKVI 80


>06_03_1305 +
           29197615-29197779,29198621-29198674,29198781-29198861,
           29200167-29200409,29200576-29200710
          Length = 225

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 297 WTEKNAGPWSKDRLKXLFSDLKIAQNGI-VCSITEVEKVDGEASANXTKGKLIFFYXWDI 473
           W EKN   W+  R+K L   L   +      S+ EV K  G+A     + K    Y +++
Sbjct: 59  WEEKNLNSWANGRIKDLLGSLDPLEFSTGKASVYEVSKCSGDAFLVTVRNKKRVGYTYEL 118


>07_01_0325 +
           2275922-2276013,2276467-2276500,2276810-2276932,
           2277334-2277401,2277494-2277585,2278662-2278987,
           2280771-2281142
          Length = 368

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 358 KSLKXSFNRSFDHGPAFFSVQCQLFTXVASGRSSTIHRGSP 236
           ++L+ +F   FD      SV C L+   AS   S +  GSP
Sbjct: 160 QTLRVAFAIEFDRAHNLLSVDCMLWPPYASCVGSVVCHGSP 200


>03_01_0067 -
           538929-539143,539306-539344,539579-539635,539727-539875,
           540298-540365,542009-542093,542185-542246,542612-542700,
           543034-543088,544127-544252,544477-544576,544697-545499
          Length = 615

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 143 VNKTTAVDDCNLQISLKRTTSNHAFGRPQVLL*RNIAVFE 24
           V+KTT  DD  LQ +LKR   N+  G  +V + ++  V +
Sbjct: 468 VHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIFKDDVVIQ 507


>02_01_0312 -
           2082614-2082677,2082815-2082945,2083041-2083129,
           2083223-2083292,2083429-2083509,2083768-2083821,
           2084864-2085067,2086272-2086366,2086976-2086997,
           2087492-2087585,2087677-2087764,2087874-2087979,
           2088103-2088189,2088261-2088309,2088418-2088521,
           2088605-2088697,2088900-2088974,2089316-2089384,
           2090182-2090250,2090339-2090374,2090471-2090565,
           2090836-2090911,2091067-2091153,2091287-2091355,
           2091654-2091731,2091836-2091925,2092436-2092642,
           2092736-2092879
          Length = 841

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 297 WTEKNAGPWSKDRLKXLFSDLKIAQNGI-VCSITEVEKVDGEASANXTKGKLIFFYXWDI 473
           W EKN   W+  R+K +   L   +      S+  V K  G+A     + K    Y +++
Sbjct: 683 WEEKNLNSWANSRIKEMLGSLDSLEFPTGKASLDGVSKCIGDAFLVTVRNKKRVGYTYEL 742

Query: 474 KVE 482
            ++
Sbjct: 743 SLK 745


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,658
Number of Sequences: 37544
Number of extensions: 172934
Number of successful extensions: 406
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)