Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2361
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-6|CAB02710.1|  342|Caenorhabditis elegans Hypothetical pr...   120   9e-28
U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81458-5|CAB03825.2|  252|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC024791-27|AAM43788.1|  254|Caenorhabditis elegans Hypothetical...    27   6.7  

>Z81030-6|CAB02710.1|  342|Caenorhabditis elegans Hypothetical
           protein C01G10.8 protein.
          Length = 342

 Score =  120 bits (288), Expect = 9e-28
 Identities = 56/110 (50%), Positives = 69/110 (62%)
 Frame = +3

Query: 219 MAXWGEGDPRWIVEXRPDATXVNNWHWTEKNAGPWSKDRLKXLFSDLKIAQNGIVCSITE 398
           MA WGEGDPRWIVE R DAT VNNWHW+EKNA PWS +RL+ L +        IV +I E
Sbjct: 1   MAKWGEGDPRWIVEERADATNVNNWHWSEKNATPWSLNRLRELLTGFSSEDGPIVVTIDE 60

Query: 399 VEKVDGEASANXTKGKLIFFYXWDIKVEMGXCXGWX**KIXGEIXMPNLS 548
           ++K+DGEA+AN  K KLIF + W I+            +  G   +PNLS
Sbjct: 61  IKKIDGEATANNRKAKLIFLFEWVIEGTFIARVSGSEDEYKGTFDIPNLS 110


>U55372-2|AAA98001.1|  980|Caenorhabditis elegans Hypothetical
           protein C02G6.1 protein.
          Length = 980

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 101 SLKRTTSNHAFGRPQVL 51
           SLKRT +NHAF +P +L
Sbjct: 620 SLKRTLTNHAFSQPYLL 636


>Z81458-5|CAB03825.2|  252|Caenorhabditis elegans Hypothetical
           protein C03E10.6 protein.
          Length = 252

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 303 PSSASCSHXLRPGXLPQSIVGHLRPXWPWFXKLRSTIRTEIRTPYANFKFNLKRE 139
           P S+SC++   PG    S   +      W  K+RST +T     + N     K+E
Sbjct: 69  PGSSSCNYECPPGYYSTSR-NNAGIEHAWCIKMRSTAKTFNSNLFVNLDIECKKE 122


>AC024791-27|AAM43788.1|  254|Caenorhabditis elegans Hypothetical
           protein Y47G6A.22 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 146 NVNKTTAVDDCNLQISLKRTTSNHAFGRP 60
           N+++T+  D+      L+R+ + HA GRP
Sbjct: 188 NLHRTSGQDETTYSAFLERSKTTHALGRP 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,935,254
Number of Sequences: 27780
Number of extensions: 165241
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)