Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2359
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    52   3e-07
02_04_0592 - 24171698-24172285                                         44   9e-05
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    29   1.6  
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918     27   8.5  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +1

Query: 49  LKPVNNFNLTAYQGIWYEISKFPNE-SXKNGXCSSAEYKLEXD-VVXVKNVHIIDGVKKY 222
           +K V N +L  Y G WYEI+ FP+    ++G  + A Y L  D  V V N    DG + +
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60

Query: 223 IEXTAKLTDDANKAAKLTVTF 285
           IE TA   D  +  AKL V F
Sbjct: 61  IEGTAYRADPVSDEAKLKVKF 81


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +1

Query: 16  AEVIHESTCPXLKPVNNFNLTAYQGIWYEISKFPN-ESXKNGXCSSAEYKLEXD--VVXV 186
           A  + + +   +  V   ++  Y G WYEI+  PN    ++G  + A Y L  D   V V
Sbjct: 3   AAAVEKKSGSEMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDV 62

Query: 187 KN-VHIIDGVKKYIEXTAKLTDDANKAAKLTVTF 285
            N      G + YI+ TA   D A+  AKL V F
Sbjct: 63  LNETWTSSGKRDYIKGTAYKADPASDEAKLKVKF 96


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 58  VNNFNLTAYQGIWYEISKFPNESXKNGXCSSAEYKLEXD 174
           V NFN+  + G WY IS   N +     C   E+++E D
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
          Length = 250

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 205 DGVKKYIEXTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDY 339
           DG  K +E T   T+     AK+ VT   GE+  DG  + L+ D+
Sbjct: 191 DGNAKEMEVTLTQTE----MAKVVVTMTGGEVEDDGEAEDLSLDF 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,137
Number of Sequences: 37544
Number of extensions: 154493
Number of successful extensions: 268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)