Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2359
(500 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 81 3e-15
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 81 3e-15
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 81 3e-15
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 81 3e-15
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 81 3e-15
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 81 3e-15
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 81 3e-15
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 42 0.001
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 80.6 bits (190), Expect = 3e-15
Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Frame = +1
Query: 7 AATAEVIHESTCPXLKPVNNFNLTAYQGIWYEISKFPNESXKNGXCSSAEYKL-EXDVVX 183
AA + H CP NF++ Y G WYEI K P + +NG C A Y L E +
Sbjct: 17 AAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPT-TFENGRCIQANYSLMENGKIK 75
Query: 184 VKNVHI-IDGVKKYIEXTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAY 360
V N + DG IE A + + AKL V KF ILATDY NYA+ Y
Sbjct: 76 VLNQELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVY 132
Query: 361 NCKYDDKKKSHQVFVWILSRNKKLEXDXXTAXDNXIXEHS 480
+C + H F WIL+RN L + + N + ++
Sbjct: 133 SCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 80.6 bits (190), Expect = 3e-15
Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Frame = +1
Query: 7 AATAEVIHESTCPXLKPVNNFNLTAYQGIWYEISKFPNESXKNGXCSSAEYKL-EXDVVX 183
AA + H CP NF++ Y G WYEI K P + +NG C A Y L E +
Sbjct: 17 AAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPT-TFENGRCIQANYSLMENGKIK 75
Query: 184 VKNVHI-IDGVKKYIEXTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAY 360
V N + DG IE A + + AKL V KF ILATDY NYA+ Y
Sbjct: 76 VLNQELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVY 132
Query: 361 NCKYDDKKKSHQVFVWILSRNKKLEXDXXTAXDNXIXEHS 480
+C + H F WIL+RN L + + N + ++
Sbjct: 133 SCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 80.6 bits (190), Expect = 3e-15
Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Frame = +1
Query: 7 AATAEVIHESTCPXLKPVNNFNLTAYQGIWYEISKFPNESXKNGXCSSAEYKL-EXDVVX 183
AA + H CP NF++ Y G WYEI K P + +NG C A Y L E +
Sbjct: 17 AAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPT-TFENGRCIQANYSLMENGKIK 75
Query: 184 VKNVHI-IDGVKKYIEXTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAY 360
V N + DG IE A + + AKL V KF ILATDY NYA+ Y
Sbjct: 76 VLNQELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVY 132
Query: 361 NCKYDDKKKSHQVFVWILSRNKKLEXDXXTAXDNXIXEHS 480
+C + H F WIL+RN L + + N + ++
Sbjct: 133 SCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 80.6 bits (190), Expect = 3e-15
Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Frame = +1
Query: 7 AATAEVIHESTCPXLKPVNNFNLTAYQGIWYEISKFPNESXKNGXCSSAEYKL-EXDVVX 183
AA + H CP NF++ Y G WYEI K P + +NG C A Y L E +
Sbjct: 17 AAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPT-TFENGRCIQANYSLMENGKIK 75
Query: 184 VKNVHI-IDGVKKYIEXTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAY 360
V N + DG IE A + + AKL V KF ILATDY NYA+ Y
Sbjct: 76 VLNQELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVY 132
Query: 361 NCKYDDKKKSHQVFVWILSRNKKLEXDXXTAXDNXIXEHS 480
+C + H F WIL+RN L + + N + ++
Sbjct: 133 SCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 80.6 bits (190), Expect = 3e-15
Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Frame = +1
Query: 7 AATAEVIHESTCPXLKPVNNFNLTAYQGIWYEISKFPNESXKNGXCSSAEYKL-EXDVVX 183
AA + H CP NF++ Y G WYEI K P + +NG C A Y L E +
Sbjct: 17 AAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPT-TFENGRCIQANYSLMENGKIK 75
Query: 184 VKNVHI-IDGVKKYIEXTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAY 360
V N + DG IE A + + AKL V KF ILATDY NYA+ Y
Sbjct: 76 VLNQELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVY 132
Query: 361 NCKYDDKKKSHQVFVWILSRNKKLEXDXXTAXDNXIXEHS 480
+C + H F WIL+RN L + + N + ++
Sbjct: 133 SCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 80.6 bits (190), Expect = 3e-15
Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Frame = +1
Query: 7 AATAEVIHESTCPXLKPVNNFNLTAYQGIWYEISKFPNESXKNGXCSSAEYKL-EXDVVX 183
AA + H CP NF++ Y G WYEI K P + +NG C A Y L E +
Sbjct: 17 AAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPT-TFENGRCIQANYSLMENGKIK 75
Query: 184 VKNVHI-IDGVKKYIEXTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAY 360
V N + DG IE A + + AKL V KF ILATDY NYA+ Y
Sbjct: 76 VLNQELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVY 132
Query: 361 NCKYDDKKKSHQVFVWILSRNKKLEXDXXTAXDNXIXEHS 480
+C + H F WIL+RN L + + N + ++
Sbjct: 133 SCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 80.6 bits (190), Expect = 3e-15
Identities = 55/160 (34%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Frame = +1
Query: 7 AATAEVIHESTCPXLKPVNNFNLTAYQGIWYEISKFPNESXKNGXCSSAEYKL-EXDVVX 183
AA + H CP NF++ Y G WYEI K P + +NG C A Y L E +
Sbjct: 17 AAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPT-TFENGRCIQANYSLMENGKIK 75
Query: 184 VKNVHI-IDGVKKYIEXTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAY 360
V N + DG IE A + + AKL V KF ILATDY NYA+ Y
Sbjct: 76 VLNQELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVY 132
Query: 361 NCKYDDKKKSHQVFVWILSRNKKLEXDXXTAXDNXIXEHS 480
+C + H F WIL+RN L + + N + ++
Sbjct: 133 SCTC-IIQLFHVDFAWILARNPNLPPETVDSLKNILTSNN 171
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 41.9 bits (94), Expect = 0.001
Identities = 26/72 (36%), Positives = 35/72 (48%)
Frame = +1
Query: 265 AKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEXDX 444
AKL V KF ILATDY NYA+ Y+C + H F WIL+RN L +
Sbjct: 12 AKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPET 68
Query: 445 XTAXDNXIXEHS 480
+ N + ++
Sbjct: 69 VDSLKNILTSNN 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.129 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,826,781
Number of Sequences: 237096
Number of extensions: 828479
Number of successful extensions: 1538
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -