Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2359
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    34   0.050
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    34   0.050
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    34   0.050
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    27   5.8  

>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 268 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 426
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 268 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 426
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 268 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 426
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 202 IDGVKKYIEXTAKLTDDANKAAKLTVTFKFGE 297
           +DG+   +E TAK+T D  +   L VTF+ G+
Sbjct: 16  VDGIN--VECTAKVTSDGVERRSLRVTFENGD 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,879,208
Number of Sequences: 27780
Number of extensions: 133428
Number of successful extensions: 230
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)