Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2358
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   6.8  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.8  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   9.0  

>SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 223 KGRSTQRRSNIFLIFFFCGTYKNHAFI*LFFF 318
           KGR   RR   FL+F+       H F+ LFFF
Sbjct: 72  KGREEYRRYYFFLLFYVSFP---HIFLGLFFF 100


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 186 GTRRAGGLSSHLQGTQYTEEVKYFFNFFFLWNLQ 287
           G R  G     ++    ++E++ F NFF +WN++
Sbjct: 401 GCRCRGDSPDTIEFPTDSDELQEFCNFFHMWNMR 434


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 441 SSFGTNYFLFIFSLSQWCFLHSFTNRFFFIYLFY 340
           S +GT+ F + F    W FL+  T  F  I   Y
Sbjct: 244 SDWGTSPFYYYFVRLPWLFLNPTTLLFLLISFVY 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,950
Number of Sequences: 5004
Number of extensions: 43796
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)