Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2358
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534     29   2.3  
04_02_0012 + 8537124-8537464,8537558-8537693,8538811-8538861,854...    29   4.0  
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    29   4.0  
12_02_0527 + 20047027-20047281,20048169-20048390,20048996-200493...    27   9.3  
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    27   9.3  

>11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534
          Length = 312

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 453 SAPLSSFGTNYFLFIFSLSQWCFLHSFTNRFFFIYLFY 340
           S+ LSS     +   FS  +WC      NR FF+  FY
Sbjct: 208 SSSLSSLQVGVYKMDFSERRWCRADDLGNRAFFVAPFY 245


>04_02_0012 +
           8537124-8537464,8537558-8537693,8538811-8538861,
           8540190-8540413,8540491-8540715,8541520-8541619,
           8541703-8541763,8543029-8543100,8543183-8543406
          Length = 477

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 244 SSVYCVPCKCDD-SPPARRVPGQLYYQSFLLTFKNFN 137
           S ++ +PC+CD  +PPA    G      +L+T   FN
Sbjct: 137 SDLFWLPCQCDGCTPPASAASGSQVGTEYLITRPLFN 173


>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
            32407174-32407257,32407362-32407784,32408368-32408434,
            32409238-32409430,32409577-32409680,32409787-32409990,
            32410174-32410427,32410511-32410735,32410812-32411033,
            32411109-32411162,32411337-32411402,32411496-32411633,
            32411979-32412032,32412334-32412393,32412975-32413340,
            32413415-32413582
          Length = 1478

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 125  LRLKTLHKPFRNKISDDDSRT 63
            LRLK L KP  NKIS D++R+
Sbjct: 1048 LRLKDLSKPPNNKISQDNNRS 1068


>12_02_0527 +
           20047027-20047281,20048169-20048390,20048996-20049354,
           20049706-20049766,20049911-20050018
          Length = 334

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -2

Query: 521 VSKY*IFK*QFSHIIPNVSGMGEAPRYRVSVLITFYLYFHYLNGVFFIHLQIVFFLFI 348
           ++KY +       ++  V G+G + +    VL+  Y Y HY       H+  +F  F+
Sbjct: 144 LNKYGLISWFSETVVKFVGGLGLSWQLSFGVLVLLYFYSHYFFASGAAHIGAMFTAFL 201


>11_01_0191 +
           1508509-1508749,1508852-1509204,1509860-1510002,
           1510195-1510256,1510406-1510479,1510812-1510864,
           1511072-1513550
          Length = 1134

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 416 YLYFHYLNGVFFIHLQIVFFLFIYFII 336
           + YF+   GVFFI +++ FF F +F +
Sbjct: 786 WFYFYGFIGVFFI-VEVFFFAFAWFFV 811


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,206,834
Number of Sequences: 37544
Number of extensions: 222741
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)