Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2358
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine rece...    33   0.22 
U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine rece...    27   8.4  
U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine rece...    27   8.4  

>U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein34 protein.
          Length = 294

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 447 PLSSFGTNYFLFIFSLSQWCFLHSFTNRFFFIY 349
           P  SF   YF F+FS+  WC +H+       IY
Sbjct: 237 PPRSFENEYFAFLFSMFLWCTIHAAEGVITLIY 269


>U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform b protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 488 SHIIPNVSGMGEAPRYRVSVLITFYLYFHYLNGVFFIHLQIVFFLFIYFIIT 333
           S +  N +G G +  YR +V      + H  + +  + L IVFFL   F +T
Sbjct: 179 SRVYVNPNGAGFSVNYRDAVAWANISFLHLFHCIPCLFLMIVFFLASIFGLT 230


>U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform a protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 488 SHIIPNVSGMGEAPRYRVSVLITFYLYFHYLNGVFFIHLQIVFFLFIYFIIT 333
           S +  N +G G +  YR +V      + H  + +  + L IVFFL   F +T
Sbjct: 179 SRVYVNPNGAGFSVNYRDAVAWANISFLHLFHCIPCLFLMIVFFLASIFGLT 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,703,222
Number of Sequences: 27780
Number of extensions: 240465
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)