Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2356
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.85
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 27 2.0
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 27 2.0
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 3.4
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 4.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.5
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 6.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 7.9
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.85
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 265 SSTRFPPRGRNLASATSTTTYVPEVSSETVRQRGRQSDSVADESIGQTRSRTRAHIRRPS 444
SST + +S+++TTT P SS + S S + S + S + + S
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 192
Query: 445 SELVDLDSFKTNSGDIPL 498
S S ++S +P+
Sbjct: 193 SSSSSSSSSSSSSSSVPI 210
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 527 LPRAKXLPKKFPQPRPVTKKSAYSQGAPPEXXTAWLSGIKFRGDW 661
LPRAK LPK P+P ++ A +G P+ L + G+W
Sbjct: 78 LPRAKPLPK--PKPETKWQRFARIKGIAPKKREGRLVFDEASGEW 120
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -2
Query: 249 VFFNFFL-----DWWRSYVTTTSATPG*RRQDFVLCLWSC 145
+FFN++L DWW+ Y T SA Q V+ L+ C
Sbjct: 701 LFFNYYLKKIFADWWQKYNFTLSAALDTGTQLSVIILFFC 740
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.0
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +2
Query: 362 AVVNQTV*LMSPLVRPEAGPVRTSGAQVQSWSTSTASKRTLVTS-HFNTKSPRRXILPRA 538
+V+NQ + P VRP V + S+S+S + +T ++ ++ SP LP A
Sbjct: 131 SVLNQEQ-VPPPPVRPN---VMSQMPPPPSYSSSGSYSQTYQSNANYTASSP----LPTA 182
Query: 539 KX-LPKKFPQPRPVTKKSAYSQGAPPEXXTA 628
P P PR V++ S+Y+ G+ P A
Sbjct: 183 SANAPLPVPPPRRVSQNSSYASGSVPAATAA 213
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 271 TRFPPRGRNLASATSTTTYVPEVSSETVRQRGRQSDSVADESIGQTRSRTRAHIRRPSS 447
++FPP + L + ++ + E S E + SDS +D S+ ++ + ++ R S
Sbjct: 414 SKFPPPSQTLVTTSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVS 472
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 276 VPSSWSQLGISY*HYYLCTGSFFGNCEAARSSIRQ 380
+P SW LG SY +Y C + + A + I+Q
Sbjct: 887 LPVSWYNLGSSYYRFYECDTTKDATLQVAINCIKQ 921
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 301 ASATSTTTYVPEVSSETVRQRGRQSDSVADESIGQTRSRTRAH 429
+SAT +TT SS + +S S + +S ++ SRT +H
Sbjct: 137 SSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSH 179
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 276 PCARGEPSIVFFNFFLDWWRSYVTTTSATPG*RRQDFVL 160
PC I F + +L ++ ++++ S PG R +D V+
Sbjct: 560 PCIPSNAVIEFSSIYLHYFATHISKRSKKPGKRLEDEVV 598
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 530 PRAKXLPKKFPQPRPVTKKSA 592
PR+ PKK P+P KK A
Sbjct: 465 PRSSYFPKKTVSPKPEAKKEA 485
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.126 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,291
Number of Sequences: 5004
Number of extensions: 49427
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -