Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2356
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0058 + 40799547-40799810,40799942-40799978,40800279-408003...    29   2.7  
09_03_0044 - 11855569-11855664,11855775-11855891,11856572-118566...    29   4.7  
07_03_1290 + 25537973-25538962                                         29   4.7  
01_07_0318 + 42703176-42703473,42703563-42704290                       28   6.2  
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381...    28   8.2  
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916...    28   8.2  

>01_07_0058 +
           40799547-40799810,40799942-40799978,40800279-40800362,
           40800563-40800615
          Length = 145

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 461 STASKRTLVTSHFNTKSPRRXILPRAKXLPKKFPQPRPVTKKSAYSQG 604
           + AS  +L++S F ++   +   P A   P   P+PR V   +AY  G
Sbjct: 9   AAASYSSLLSSSFPSRRRPQPSAPLASPAPSSPPRPRSVAAAAAYGYG 56


>09_03_0044 -
           11855569-11855664,11855775-11855891,11856572-11856682,
           11856768-11856874,11857182-11857221,11857328-11857408,
           11857578-11857631,11857800-11857860,11857984-11858029,
           11858276-11858352,11858448-11858563,11858654-11858890
          Length = 380

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 174 QDFVLCLWSCRSGCCS---RPIYRCVFCFTFVSDVVVCVGFKW 55
           +D    +W CRSG C+   RP+   +F  ++VS V +     W
Sbjct: 230 EDGTARIWDCRSGKCTQVIRPVKNKIFEGSWVSCVAIDASESW 272


>07_03_1290 + 25537973-25538962
          Length = 329

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +1

Query: 265 SSTRFPPRGRNLASATSTTTYVPEVSSETVRQRGRQSDSVADESIGQTRSRTRAHIR 435
           +S R P R R +A+A +      EVSS +  QRGR   +    S     SR+R   R
Sbjct: 111 ASPRSPGRRRRIAAAEAA-----EVSSSSSSQRGRSGRAAPASSSSSASSRSRRATR 162


>01_07_0318 + 42703176-42703473,42703563-42704290
          Length = 341

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 159 CLWSCRSGCCSRPIYRCVFCFTF 91
           C+ SC S C ++ +  C +C TF
Sbjct: 76  CVVSCPSNCPNKCLVACAYCLTF 98


>07_03_1316 +
           25736931-25737206,25737276-25737329,25738036-25738189,
           25740235-25740313,25740413-25740492,25740588-25740654,
           25741548-25741619,25742071-25742223,25742309-25742392,
           25742811-25742877
          Length = 361

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +1

Query: 178 PSTRGRGRGRNIAXXXXXXXXXXD-NTRFPSSTRFPP---RGRNLASATSTTTYVPEVSS 345
           P +RGR R R+            D   R  S  R+     R R+    + + +Y P+   
Sbjct: 247 PRSRGRSRSRSPRRGYRDDYRERDYRKRSRSRDRYGRDRYRERDYRRRSRSRSYTPD--- 303

Query: 346 ETVRQRGRQSDSVADESIGQTRSRT 420
              R+RGR S S A  S+ ++RSR+
Sbjct: 304 -DYRRRGRDSVSPARRSLSRSRSRS 327


>06_01_1113 -
           9164953-9165044,9166453-9166586,9166624-9166734,
           9166815-9167066,9167152-9168186,9168313-9169187,
           9169476-9169673
          Length = 898

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = +2

Query: 407 PEAGPVRTSGAQVQSWSTSTASKRTLVTSHFNTKSPRRXILPRAKXLPKKFPQPRPV--T 580
           P +   RT+ A          S R   +       PR+   P +  L   FP P+PV  +
Sbjct: 449 PSSSQARTAAAPAPPSPPEPPSPRDPASPPSLRSPPRQPTPPPSPSLQPAFPAPQPVQAS 508

Query: 581 KKSAYSQGAPP 613
             S   Q APP
Sbjct: 509 PTSPAKQHAPP 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,048,756
Number of Sequences: 37544
Number of extensions: 364686
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)