Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2356
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3 prot...    32   1.7  
AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3 pr...    32   1.7  
U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.                  31   4.0  
BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome associ...    30   9.1  
AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome associ...    30   9.1  
AF195139-1|AAG33941.1|  717|Homo sapiens pinin protein.                30   9.1  

>Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3
           protein.
          Length = 711

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +1

Query: 184 TRGRGRGRNIAXXXXXXXXXXDNTRFPSSTRFPPRGRNLASATSTTTYVPEVSSETVRQR 363
           TR R RGR              ++   SS+     G + +S +S++      SS T    
Sbjct: 552 TRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSS 611

Query: 364 GRQSDS-VADESIGQTRSRTRAHIR 435
           GR S S  +  S  ++RSR R H R
Sbjct: 612 GRDSSSSTSSSSESRSRSRGRGHNR 636


>AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3
           protein.
          Length = 717

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +1

Query: 184 TRGRGRGRNIAXXXXXXXXXXDNTRFPSSTRFPPRGRNLASATSTTTYVPEVSSETVRQR 363
           TR R RGR              ++   SS+     G + +S +S++      SS T    
Sbjct: 558 TRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSS 617

Query: 364 GRQSDS-VADESIGQTRSRTRAHIR 435
           GR S S  +  S  ++RSR R H R
Sbjct: 618 GRDSSSSTSSSSESRSRSRGRGHNR 642


>U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.
          Length = 743

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +1

Query: 181 STRGRGRGRNIAXXXXXXXXXXDNTRFPSSTRFPPRGRNLASATSTTTYVPEVSSETVRQ 360
           +TR R RGR              ++   SS+     G + +S +S++      SS T   
Sbjct: 583 NTRSRSRGRTRNRTTKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGS 642

Query: 361 RGRQSDS-VADESIGQTRSRTRAHIR 435
             R S S  +  S  ++RSR R H R
Sbjct: 643 SSRDSSSSTSSSSESRSRSRGRGHNR 668


>BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome
           associated protein protein.
          Length = 717

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +1

Query: 184 TRGRGRGRNIAXXXXXXXXXXDNTRFPSSTRFPPRGRNLASATSTTTYVPEVSSETVRQR 363
           TR R RGR              ++   SS+     G + +S +S++      SS T    
Sbjct: 558 TRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSS 617

Query: 364 GRQSDS-VADESIGQTRSRTRAHIR 435
            R S S  +  S  ++RSR R H R
Sbjct: 618 SRDSSSSTSSSSESRSRSRGRGHNR 642


>AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome
           associated protein variant protein.
          Length = 717

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +1

Query: 184 TRGRGRGRNIAXXXXXXXXXXDNTRFPSSTRFPPRGRNLASATSTTTYVPEVSSETVRQR 363
           TR R RGR              ++   SS+     G + +S +S++      SS T    
Sbjct: 558 TRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSS 617

Query: 364 GRQSDS-VADESIGQTRSRTRAHIR 435
            R S S  +  S  ++RSR R H R
Sbjct: 618 SRDSSSSTSSSSESRSRSRGRGHNR 642


>AF195139-1|AAG33941.1|  717|Homo sapiens pinin protein.
          Length = 717

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +1

Query: 184 TRGRGRGRNIAXXXXXXXXXXDNTRFPSSTRFPPRGRNLASATSTTTYVPEVSSETVRQR 363
           TR R RGR              ++   SS+     G + +S +S++      SS T    
Sbjct: 558 TRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSS 617

Query: 364 GRQSDS-VADESIGQTRSRTRAHIR 435
            R S S  +  S  ++RSR R H R
Sbjct: 618 SRDSSSSTSSSSESRSRSRGRGHNR 642


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.311    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,900,359
Number of Sequences: 237096
Number of extensions: 1909479
Number of successful extensions: 3714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3711
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)