Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2356
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ139957-1|ABA06528.1|  279|Drosophila melanogaster TipE-like pr...    31   2.0  
AY059448-1|AAL13354.1|  279|Drosophila melanogaster GH24564p pro...    31   2.0  
AE014297-1056|AAF54465.2|  279|Drosophila melanogaster CG12806-P...    31   2.0  
AY113445-1|AAM29450.1| 1524|Drosophila melanogaster RE29777p pro...    30   3.5  
AE013599-2523|AAF57823.2| 1524|Drosophila melanogaster CG10936-P...    30   3.5  
AE013599-2522|AAM68482.1| 1524|Drosophila melanogaster CG10936-P...    30   3.5  
AE014298-484|AAF45840.1|  238|Drosophila melanogaster CG14421-PA...    29   4.6  

>DQ139957-1|ABA06528.1|  279|Drosophila melanogaster TipE-like
           protein 1 protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -2

Query: 180 RRQDFV---LCLWS-CRSGCCSRPIYRCVFCF-TFV 88
           RR+D V    C WS CR GC S  +YRCV  + TF+
Sbjct: 92  RREDLVGIFNCSWSSCREGCTS-DLYRCVHIYVTFI 126


>AY059448-1|AAL13354.1|  279|Drosophila melanogaster GH24564p
           protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -2

Query: 180 RRQDFV---LCLWS-CRSGCCSRPIYRCVFCF-TFV 88
           RR+D V    C WS CR GC S  +YRCV  + TF+
Sbjct: 92  RREDLVGIFNCSWSSCREGCTS-DLYRCVHIYVTFI 126


>AE014297-1056|AAF54465.2|  279|Drosophila melanogaster CG12806-PA
           protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = -2

Query: 180 RRQDFV---LCLWS-CRSGCCSRPIYRCVFCF-TFV 88
           RR+D V    C WS CR GC S  +YRCV  + TF+
Sbjct: 92  RREDLVGIFNCSWSSCREGCTS-DLYRCVHIYVTFI 126


>AY113445-1|AAM29450.1| 1524|Drosophila melanogaster RE29777p
           protein.
          Length = 1524

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 247 DNTRFPSSTRFPPRGR-----NLASATSTTTYVPEVSSETVRQRGRQSDSVADESIGQTR 411
           +N   P++T F PR R     + AS T+TTT   EVSS+   + G         +   T+
Sbjct: 230 ENPATPAATAFRPRNRYQPGSSTASTTTTTTSSAEVSSKRYNRFGSNRAKATSTTTSTTQ 289

Query: 412 S 414
           +
Sbjct: 290 N 290


>AE013599-2523|AAF57823.2| 1524|Drosophila melanogaster CG10936-PB,
           isoform B protein.
          Length = 1524

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 247 DNTRFPSSTRFPPRGR-----NLASATSTTTYVPEVSSETVRQRGRQSDSVADESIGQTR 411
           +N   P++T F PR R     + AS T+TTT   EVSS+   + G         +   T+
Sbjct: 230 ENPATPAATAFRPRNRYQPGSSTASTTTTTTSSAEVSSKRYNRFGSNRAKATSTTTSTTQ 289

Query: 412 S 414
           +
Sbjct: 290 N 290


>AE013599-2522|AAM68482.1| 1524|Drosophila melanogaster CG10936-PA,
           isoform A protein.
          Length = 1524

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 247 DNTRFPSSTRFPPRGR-----NLASATSTTTYVPEVSSETVRQRGRQSDSVADESIGQTR 411
           +N   P++T F PR R     + AS T+TTT   EVSS+   + G         +   T+
Sbjct: 230 ENPATPAATAFRPRNRYQPGSSTASTTTTTTSSAEVSSKRYNRFGSNRAKATSTTTSTTQ 289

Query: 412 S 414
           +
Sbjct: 290 N 290


>AE014298-484|AAF45840.1|  238|Drosophila melanogaster CG14421-PA
           protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 265 SSTRFPPRGRNLASATSTTTYVPEVSSETVRQRGRQSDSVADESIGQTRSRTRAHIRR 438
           S+    P G   ++ TSTTT  P  +S T     RQ + + D+       +   H +R
Sbjct: 72  STVTTSPTGPTTSTGTSTTTTTPTTTSPTGTTTARQLEPLDDQEDDDEEEQQLGHHQR 129


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.311    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,471,867
Number of Sequences: 53049
Number of extensions: 610559
Number of successful extensions: 1646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)