Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2356
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 33 0.20
AF025457-8|AAB70968.2| 383|Caenorhabditis elegans Hypothetical ... 29 2.4
U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical... 29 3.2
U41551-3|AAY86279.1| 126|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF099913-10|AAK93839.1| 303|Caenorhabditis elegans Hypothetical... 28 5.6
AF025457-9|AAB70969.2| 393|Caenorhabditis elegans Hypothetical ... 28 5.6
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 27 9.8
AF101318-7|AAC69345.1| 826|Caenorhabditis elegans Hypothetical ... 27 9.8
AF099913-11|AAM22044.1| 286|Caenorhabditis elegans Hypothetical... 27 9.8
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 33.1 bits (72), Expect = 0.20
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +1
Query: 187 RGRGRGRNIAXXXXXXXXXXDNTRFPSSTRFPPRG---RNLASATSTTTYVPEVSSETVR 357
+GR R R++A +NT P+ P +G R+ AS+++T++ VP + + R
Sbjct: 377 KGRSR-RSVATEDTSVTEEVENTEHPTEEETPKQGRGRRSAASSSATSSAVP--TPRSTR 433
Query: 358 QRGRQSDSVADE-SIGQTRSRTRAH 429
RGR+S + + +T T+ H
Sbjct: 434 GRGRKSQANEENLQEKETEDPTKTH 458
>AF025457-8|AAB70968.2| 383|Caenorhabditis elegans Hypothetical
protein C08E3.9 protein.
Length = 383
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 412 FWSDQWTHQLHCLIDDRAASQFPKKLP 332
FW D++++ H L DR+ +Q PK LP
Sbjct: 49 FWYDRFSNGNHDLDYDRSVNQVPKSLP 75
>U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical
protein R13A1.10 protein.
Length = 226
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 144 RSGCCSRPIYRCVFCFTFVSDVVVCVGFK 58
RS C + + R +FC TF+ D V+C FK
Sbjct: 11 RSNC--QDVARKIFCETFLKDNVICNSFK 37
>AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical
protein Y73B3A.7 protein.
Length = 205
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 250 NTRFPSSTRFPPRGRNLASATSTTTYVPEVSSETVRQRGRQSDSV 384
+T P+S+R P +N+A A ++ E + + + + G +SD +
Sbjct: 66 STNNPTSSRLPLNTKNVAQALGGRLHIDETAIDALFKNGSKSDRI 110
>U41551-3|AAY86279.1| 126|Caenorhabditis elegans Hypothetical
protein T06F4.3 protein.
Length = 126
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 494 HFNTKSPRRXILPRAKXLPKKFPQPR-PVTKKSAYSQGAPPE 616
H N++ ++ I+P A P+ F + P+ + + GAPP+
Sbjct: 17 HLNSEKAQKEIVPVADYTPQAFENEKSPIDSEESGGGGAPPD 58
>AF099913-10|AAK93839.1| 303|Caenorhabditis elegans Hypothetical
protein C29F9.3a protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = -2
Query: 360 LPHSFRRNFRYISSSASS*CQVATTRREPCARGEPSIVFFNFFLDWWRSYVTTTS 196
L S NFR SS +S Q T +RE +P+I F L W + T S
Sbjct: 107 LADSLINNFRVQISSLNSVKQELTRKRERVGNAKPTIDKFQTILYWTNAIRTNMS 161
>AF025457-9|AAB70969.2| 393|Caenorhabditis elegans Hypothetical
protein C08E3.10 protein.
Length = 393
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 412 FWSDQWTHQLHCLIDDRAASQFPKKLP 332
FW ++ H H L+ DR+A PK LP
Sbjct: 49 FWFYRFYHGNHDLLYDRSADPVPKSLP 75
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 131 QQPLRQLQRHKTKSCRRQPGVADVVVT*LLHQSRKK 238
QQP+R Q+H + QP V+ + HQ R K
Sbjct: 366 QQPIRFSQQHYQVNLDNQPSTGQVLQMQMQHQKRMK 401
>AF101318-7|AAC69345.1| 826|Caenorhabditis elegans Hypothetical
protein Y73C8C.3 protein.
Length = 826
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 527 LPRAKXLPKKFPQPRPVTKKSAYSQGAPPEXXTAWLSGIKFRGDW 661
L + K K+ P +P+ K A P+ A IK R DW
Sbjct: 530 LAKPKKSKKQQPSEKPIAKTEEKQSNACPKCFRASEYNIKLREDW 574
>AF099913-11|AAM22044.1| 286|Caenorhabditis elegans Hypothetical
protein C29F9.3c protein.
Length = 286
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 351 SFRRNFRYISSSASS*CQVATTRREPCARGEPSIVFFNFFLDWWRSYVTTTS 196
S NFR SS +S Q T +RE +P+I F L W + T S
Sbjct: 93 SLINNFRVQISSLNSVKQELTRKRERVGNAKPTIDKFQTILYWTNAIRTNMS 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.126 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,689
Number of Sequences: 27780
Number of extensions: 296737
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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