Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2353
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   1.0  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   4.1  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   7.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   7.2  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    25   9.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +1

Query: 139 ISCDKYWKCDN----GVAELKTCGNGLAFDATDS--KYLTENCDYLHN 264
           + CD+ W C+N    G+  L  C NG+    +D   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 163 CDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVEC 273
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 265 RCEGSRSSRSS-IWNLWRRKRDRYRRFSVRLHR 170
           RC+G +S  +  I++ WR   D YR  SV L R
Sbjct: 401 RCQGHKSWVTDVIFDAWRCDDDNYRIASVGLDR 433


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 337 FPDENKCDVFWNCW 378
           F D N  D +WNCW
Sbjct: 350 FADRNFYDDWWNCW 363


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 561 FGMSVTTERASVGDLT-GGRAAESV--CYFFVFALRNLIS 451
           FG  VTTE + + DLT   RA + V   Y + FA +NL++
Sbjct: 214 FGSKVTTEFSQINDLTLIARAHQLVQEGYKYHFADKNLVT 253


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 537 VQSSRSSRKIAVNTTSVSXALPASTVAPSGTVFKIGDA 650
           + S  SS  I    +SVS  L +ST +PS T   I  +
Sbjct: 560 ISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSS 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,691
Number of Sequences: 5004
Number of extensions: 51784
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)