Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2353
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0589 + 20850249-20850491,20850583-20851839 31 0.80
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323... 31 0.80
02_05_0040 + 25341418-25341810 30 1.8
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 29 3.2
01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918 29 3.2
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 4.2
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 4.2
09_06_0280 + 22010270-22011407,22011890-22013097 28 5.6
02_02_0183 + 7576901-7576908,7577666-7578176 28 7.4
10_01_0001 - 22485-22526,23308-23436,24346-24473,24801-24862,253... 27 9.8
06_03_0915 - 25929433-25930893 27 9.8
03_05_0857 - 28288892-28288969,28289478-28289580,28289979-28290109 27 9.8
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 27 9.8
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 27 9.8
>12_02_0589 + 20850249-20850491,20850583-20851839
Length = 499
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -2
Query: 289 AVSSLRTQRCEGSRSSRSSIWNLWRRKRDRYRRFSVRLHRCRTSSI 152
A SSL T S S R ++ +WR+ R+ +R+FS ++C +S+
Sbjct: 270 AYSSLLT--LYASLSDRGNLDRVWRKMRETFRKFSDTEYKCMLTSL 313
>08_02_0182 -
13930436-13931245,13931348-13931627,13931788-13932324,
13932482-13932579,13932678-13933118
Length = 721
Score = 31.1 bits (67), Expect = 0.80
Identities = 28/98 (28%), Positives = 42/98 (42%)
Frame = -3
Query: 432 LSVVGKSGAALIAGGFSVPAVPEDVALVFIREDAVQSRTVGSGDWGLELCPLSALNVVKV 253
+ V+ S A I + PA+ L ++ D+V ++ +GSG GL + L+ V
Sbjct: 200 IMVMTCSFAYYIVPSYLFPAISTISVLCWLYRDSVTAQQIGSGASGLGVGSF-GLDWNTV 258
Query: 252 VAVLGQVFGICGVESETVTAGFQFGYTVVALPVFVTGD 139
V LG V AGF T VA+P+ D
Sbjct: 259 VGFLGNPLASPAFAIFNVMAGFALS-TYVAVPILYWTD 295
>02_05_0040 + 25341418-25341810
Length = 130
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 423 RQRVPRLHVG*SG---SGVQKRRSSKRIRLPGP--R*GLQRWLVQSSRSSR 560
R+ PR G S SG Q+RR + R R GP R G RW SSR R
Sbjct: 74 RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGPQLRCGAPRWRHGSSRQRR 124
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 268 ECGERTQLEPPISTPHCSRLYGIF 339
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>01_06_1281 - 35966121-35966392,35966406-35966574,35966607-35966918
Length = 250
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -2
Query: 310 EWRLGARAVSSLRTQRC---EGSRSSRSSIWNLWR 215
+WR R LR+QRC EG RS + +WR
Sbjct: 156 KWRRSGRCQRGLRSQRCTAREGFRSKEEMLGIVWR 190
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 274 RTQRCEGSRSSRSSIWNLWRRKRDR 200
R RC G ++RS+ LWRR+R R
Sbjct: 20 RVSRCSGRPATRSAPSILWRRRRPR 44
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +1
Query: 373 CWNGEASRYQCSPGLAYDRESRVCMWADQVPECKNEEVANGFGCPAPGEVSNAGSFSRHA 552
CW G + RY+CSP VCM ++P + + P EV + G H
Sbjct: 77 CWRGLSRRYKCSPERTV---LSVCMLTGEMPRVQTSRLGKN-----PIEVDSDGGEDLHV 128
Query: 553 HPE 561
E
Sbjct: 129 DYE 131
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 475 NEEVANGFGCPAPGEVSNAGSFSRHAH 555
N + AN + CP PGE + S +++
Sbjct: 275 NNQAANNWSCPTPGEARRSACISNNSY 301
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Frame = -2
Query: 454 QPTCRRGTLCRRQVRGCTDSGXXXXXXXXXXXRTCFHQGRCRTVSNSGEWRL-------- 299
+P +RG RR+ R C G C +G G +
Sbjct: 48 RPARQRGGGGRRRRRRCGGGGGGAARWIRQPLARCDRRGGAEAEGGDGTGDVEAEGGGGG 107
Query: 298 GARAVSSLRTQRCEGSRSSRSSIWNLWRRKR 206
G V + +R EG S + W WRR+R
Sbjct: 108 GGGGVGWMGMRRAEGGGSGSVARWRRWRRRR 138
>10_01_0001 -
22485-22526,23308-23436,24346-24473,24801-24862,
25388-25585,25807-25898,26941-26994
Length = 234
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 157 WKCDNGVAELKTCGNGLAFDATDSKYLTEN-CDYLHNVECGERTQLEPPIS 306
W C G E CG + A ++ + C Y + CG +L+PP S
Sbjct: 9 WACTGGSQEA-ICGPEASKLAIAVPTISSSSCSYFYRYRCGRYEELKPPSS 58
>06_03_0915 - 25929433-25930893
Length = 486
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -3
Query: 357 ALVFIREDAVQSRTVGSGDWGLELCPLSALNVVKVVAVLGQVFGI 223
AL+ +R D + +++G G+ L + L VV ++ V+G V+ +
Sbjct: 438 ALIALRLDK-EGKSLGKGERLLSIVMLGLAMVVSIIGVIGNVYSL 481
>03_05_0857 - 28288892-28288969,28289478-28289580,28289979-28290109
Length = 103
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 489 KRIRLPGPR*GLQRWLVQSSRSSRKIAVNTTSVSXALPAST 611
K +RLPG G RWLV+ RK V+T + LP T
Sbjct: 30 KSLRLPGYPVGWSRWLVKPITRFRKNLVHTKII--CLPVVT 68
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 463 PECK-NEEVANGFGCPAPGEVSNAGSFSRHAHPERLP*ILHLSRXRCPRVXLPHRE 627
PEC+ N + +G+ C AP ++S R P R P HL P R+
Sbjct: 460 PECQTNARLRSGWICSAPSDLSQGLLIGRPRSPARNPRRDHLKSSEWELRRRPRRD 515
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 84 CRPRVLQMPRRLRFLPSPHLL 146
C PR + PR L +L SPH+L
Sbjct: 351 CSPRKHEPPRCLNYLTSPHVL 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,257
Number of Sequences: 37544
Number of extensions: 427243
Number of successful extensions: 1476
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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