Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2352
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148...    35   0.026

>01_06_0569 +
           30313337-30313650,30314271-30314353,30314763-30314876,
           30315876-30315938,30316289-30316380,30316464-30316544,
           30316629-30316727,30316795-30316933,30317017-30317165
          Length = 377

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
 Frame = +2

Query: 152 FNSPTVLEKFVTTCDSDHGEXYSSCNLEMSPAGRA-------LF--HXYLDTXVPXDGRI 304
           FNS   L+++    DS++G   SS +LE++  G         LF  +  LD       +I
Sbjct: 152 FNSKDELKRWHLYSDSEYG-GLSSASLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKI 210

Query: 305 KXAGYCAMRSKCKGNXSKERPRXIGICITL*XLKXRGDGRAYLLNIST 448
           + +G+C MRSK K N   +      I      +K RGDGR Y+  I T
Sbjct: 211 RRSGFCGMRSK-KFNGFIDLDAYDTIA-----MKLRGDGRCYISTIYT 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,842,449
Number of Sequences: 37544
Number of extensions: 127416
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)