Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2352
         (450 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF151823-1|AAD34060.1|  327|Homo sapiens CGI-65 protein protein.       43   6e-04
BC000780-1|AAH00780.1|  327|Homo sapiens NADH dehydrogenase (ubi...    41   0.002

>AF151823-1|AAD34060.1|  327|Homo sapiens CGI-65 protein protein.
          Length = 327

 Score = 42.7 bits (96), Expect = 6e-04
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +2

Query: 152 FNSPTVLEKFVTTCDSDHGEXYSSCNLEMSPAGR-ALFHXYLDTXVPXDGRIKXAGYCAM 328
           F     L+K+  T D   G   S   L+M    + AL +  L +  P DG    +GYCAM
Sbjct: 127 FRGKEDLDKWTVTSDKTIGGR-SEVFLKMGKNNQSALLYGTLSSEAPQDGESSRSGYCAM 185

Query: 329 RSKCKGNXSKERPRXIGICITL*XLKXRGDGRAYLLNI 442
            S+      K +            L+ RGDGR +++NI
Sbjct: 186 ISRIPRGAFKRKMSYDWSQFNTLYLRVRGDGRPWMVNI 223


>BC000780-1|AAH00780.1|  327|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, assembly factor 1
           protein.
          Length = 327

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
 Frame = +2

Query: 152 FNSPTVLEKFVTTCDSDHGEXYSSCNLEMSPAGR-ALFHXYLDTXVPXDGRIKXAGYCAM 328
           F     L+K+  T D   G   S   L+M    + AL +  L +  P DG    +GYCAM
Sbjct: 127 FRGKEDLDKWTVTSDKTIGGR-SEVFLKMGKNNQSALLYGTLSSEAPQDGESTRSGYCAM 185

Query: 329 RSKC-KGNXSKERPRXIGICITL*XLKXRGDGRAYLLNI 442
            S+  +G   ++         TL  L+ RGDGR +++NI
Sbjct: 186 ISRIPRGAFERKMSYDWSQFNTL-YLRVRGDGRPWMVNI 223


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,132,665
Number of Sequences: 237096
Number of extensions: 715987
Number of successful extensions: 859
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)