Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2352
         (450 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094636-1|AAM10989.1|  296|Drosophila melanogaster AT05708p pro...    96   2e-20
AY060912-1|AAL28460.1|  296|Drosophila melanogaster GM05702p pro...    96   2e-20
AE014297-4425|AAF56928.1|  296|Drosophila melanogaster CG7598-PA...    96   2e-20

>AY094636-1|AAM10989.1|  296|Drosophila melanogaster AT05708p
           protein.
          Length = 296

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 46/118 (38%), Positives = 68/118 (57%)
 Frame = +2

Query: 95  YDMDPLLIAXPGEIDLLXXFNSPTVLEKFVTTCDSDHGEXYSSCNLEMSPAGRALFHXYL 274
           ++ DP+L+  PGE D++  F +P VL+K+  T D+DHGE  S+  LE+S AG  LFH  +
Sbjct: 75  FESDPILVFRPGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGLFHGQV 134

Query: 275 DTXVPXDGRIKXAGYCAMRSKCKGNXSKERPRXIGICITL*XLKXRGDGRAYLLNIST 448
           ++    DG IK  GY  +R+K      K           +  +K RGDGR+YL+N+ T
Sbjct: 135 NSDHTKDGIIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLIMKVRGDGRSYLINLHT 192


>AY060912-1|AAL28460.1|  296|Drosophila melanogaster GM05702p
           protein.
          Length = 296

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 46/118 (38%), Positives = 68/118 (57%)
 Frame = +2

Query: 95  YDMDPLLIAXPGEIDLLXXFNSPTVLEKFVTTCDSDHGEXYSSCNLEMSPAGRALFHXYL 274
           ++ DP+L+  PGE D++  F +P VL+K+  T D+DHGE  S+  LE+S AG  LFH  +
Sbjct: 75  FESDPILVFRPGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGLFHGQV 134

Query: 275 DTXVPXDGRIKXAGYCAMRSKCKGNXSKERPRXIGICITL*XLKXRGDGRAYLLNIST 448
           ++    DG IK  GY  +R+K      K           +  +K RGDGR+YL+N+ T
Sbjct: 135 NSDHTKDGIIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHT 192


>AE014297-4425|AAF56928.1|  296|Drosophila melanogaster CG7598-PA
           protein.
          Length = 296

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 46/118 (38%), Positives = 68/118 (57%)
 Frame = +2

Query: 95  YDMDPLLIAXPGEIDLLXXFNSPTVLEKFVTTCDSDHGEXYSSCNLEMSPAGRALFHXYL 274
           ++ DP+L+  PGE D++  F +P VL+K+  T D+DHGE  S+  LE+S AG  LFH  +
Sbjct: 75  FESDPILVFRPGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGLFHGQV 134

Query: 275 DTXVPXDGRIKXAGYCAMRSKCKGNXSKERPRXIGICITL*XLKXRGDGRAYLLNIST 448
           ++    DG IK  GY  +R+K      K           +  +K RGDGR+YL+N+ T
Sbjct: 135 NSDHTKDGIIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHT 192


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,822,681
Number of Sequences: 53049
Number of extensions: 218798
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)