Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2352
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical pr... 54 4e-08
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 2.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 2.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 2.7
AC006695-7|AAM48553.1| 724|Caenorhabditis elegans Titin family ... 28 2.7
AC006695-6|AAU45229.1| 703|Caenorhabditis elegans Titin family ... 28 2.7
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 28 2.7
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 28 2.7
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 28 2.7
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 28 2.7
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 28 2.7
>Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical
protein C50B8.3 protein.
Length = 340
Score = 54.4 bits (125), Expect = 4e-08
Identities = 30/93 (32%), Positives = 52/93 (55%)
Frame = +2
Query: 152 FNSPTVLEKFVTTCDSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAGYCAMR 331
F++ L+ + CDSD E +S+C+L S G A+F + T V DGR++ AG+ +M+
Sbjct: 139 FDTQEKLDLWKIGCDSDWKEGFSTCSLVNSDRGTAVFSGNISTKVLKDGRVERAGWASMK 198
Query: 332 SKCKGNXSKERPRXIGICITL*XLKXRGDGRAY 430
+ + ++++ + LK RGDGR+Y
Sbjct: 199 LEDRKAFNRKKFLSKWRNFSHLLLKVRGDGRSY 231
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-7|AAM48553.1| 724|Caenorhabditis elegans Titin family
protein 1, isoform a protein.
Length = 724
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 602 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 656
>AC006695-6|AAU45229.1| 703|Caenorhabditis elegans Titin family
protein 1, isoform b protein.
Length = 703
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 581 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 635
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 SPTVLEKFVTTC--DSDHGEXYSSCNLEMSPAGRALFHXYLDTXVPXDGRIKXAG 316
+PT L+ V TC +S+HG SSC +E++ + + + + +K G
Sbjct: 1007 APTNLDSGVYTCTAESEHGVSNSSCQVELTISAESSPESFEKVEITPPEEVKETG 1061
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,750,916
Number of Sequences: 27780
Number of extensions: 116626
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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