Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2349
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    29   0.58 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.0  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    26   4.1  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   9.5  

>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 473 GHNNYLXSYLCLCKVNYILFSLQFSIFLHWW 381
           G  NY    L L ++  IL  +QF IFL WW
Sbjct: 167 GSGNYEMVGLHLQRILAILLLIQFPIFLIWW 197


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 554 SVISLNSSVLYVSHSKNKKVHYVCRXQGHNN 462
           SV S N SV++ SHS ++   YVC+     N
Sbjct: 32  SVSSPNESVIHSSHSASEADEYVCKLSYEGN 62


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 452 SYLCLCKVNYILFSLQFSIFLHWWINKL 369
           SYL +  + Y+ FS+ +++FL+ W   L
Sbjct: 189 SYLVVVSLAYVSFSIIYALFLNPWTGSL 216


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 561 ETLFLRCXLQNHNGLQPLF-GFWNGFLHTL 647
           +  FL+C LQN+  + P++  F+N   H+L
Sbjct: 131 QEFFLKCFLQNNKSVTPVYESFFNQPRHSL 160


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 539 NSSVLYVSHSKNKKVHYVCRXQGHNNYLXSYLCLCKVNYILFSLQFSIFLHWW 381
           N S+   +    KKV ++   + H NY    L L K         +SI LH W
Sbjct: 323 NLSIKNAATLYEKKVVFMSFNRWHANYESHVLDLQKAELFSQKAYYSIALHKW 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,078
Number of Sequences: 5004
Number of extensions: 41808
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)