Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2349
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805     31   0.60 
09_04_0402 - 17304828-17305622                                         28   7.4  

>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
          Length = 517

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 377 NKLIAWCGGGAFRYXA*IPSCNLRCEVEVSTNL-LNKLYH 261
           NKL+  CGGGA R  + + S N  C   + TN+ L+ L H
Sbjct: 137 NKLMITCGGGATRLESMVLSLNKACLRRLPTNVTLDSLVH 176


>09_04_0402 - 17304828-17305622
          Length = 264

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 283 LVDTSTSHLKLHDGIHAXYLKAPPP 357
           L+ TSTS    HD   A YL +PPP
Sbjct: 30  LLSTSTSTSPPHDFSFAHYLSSPPP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,053,903
Number of Sequences: 37544
Number of extensions: 227040
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)