Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2347
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   1.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   1.8  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   7.1  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   7.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    24   9.4  

>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 25  HFGYGISLYFKLKDKDRNLSFISN 96
           H+GY +S+  KL   DRN+ +I++
Sbjct: 667 HYGYMVSILSKLIADDRNIVYIAS 690


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 82  SFISNVKFWEILNSCAYXIKDRHGVKFRFI 171
           +++SN  + ++L+  +  +KDR G+  RF+
Sbjct: 630 AYVSNSDWRDVLDEVSLSLKDRLGIALRFL 659


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
 Frame = -2

Query: 227 EIWLGLECRSRAY-------RCLQVKINRNFTPCLSLXSYAQLFKISQNFT 96
           EIWL LEC  R Y        C ++K    ++P   L      +   +NFT
Sbjct: 202 EIWLALECGYRYYYMGYYIHTCPKMKYKATYSPSYLLNPGTNKWIPIENFT 252


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 241 SPVCIYNFAMGDRAAGSTLLAENRRRXSFQYVPQ 342
           +P+CI   A GD+   + L+A    +    + P+
Sbjct: 136 NPICIGRHAFGDQYKSTDLVASGPGKLELSFTPK 169


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 67  KDRNLSFISNVKFWEILNSCAYXI-KDRHGVKFRFILTC 180
           K  +L +   +  W+++N C   I ++ H   F  IL C
Sbjct: 423 KGYSLQYFGQLLVWDVVNVCKADIEREYHVYLFEKILLC 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,228
Number of Sequences: 5004
Number of extensions: 32580
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)