Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2347
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0242 - 6742342-6742803                                           27   5.3  
12_02_1259 - 27382639-27384284,27386570-27386612                       27   7.0  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    27   7.0  
12_02_1260 - 27395754-27397499                                         27   9.2  
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889...    27   9.2  

>03_02_0242 - 6742342-6742803
          Length = 153

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 271 GDRAAGSTLLAENRRRXSFQYVPQPVQNW 357
           GD  AG T   E RR  S  + P P + W
Sbjct: 119 GDEEAGVTTTKERRRSSSSSWRPDPDRRW 147


>12_02_1259 - 27382639-27384284,27386570-27386612
          Length = 562

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 311 GDEXLFNMYHNRFKIGLASSVTLIILELANFMYGITMXTP 430
           G    FN Y+  F I +  S TLII   +N  + I +  P
Sbjct: 161 GIASFFNWYYFTFTIAMMVSATLIIYLQSNINWAIGLAVP 200


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 132  VRTTIQNFPKFHVRNETKISVFVFQLEIKRDTISK 28
            V  TI ++PK  V+N  +I+ F+ Q+  +   ISK
Sbjct: 1087 VDLTISHWPKSQVKNSNEITEFLTQIVSEHTGISK 1121


>12_02_1260 - 27395754-27397499
          Length = 581

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 311 GDEXLFNMYHNRFKIGLASSVTLIILELANFMYGITMXTP 430
           G    FN Y+  F + +  S TLII   +N  + I +  P
Sbjct: 187 GIASFFNWYYFTFTVAMMLSATLIIYLQSNVSWAIGLAVP 226


>01_07_0264 -
           42388455-42388565,42388656-42388688,42388792-42388905,
           42389011-42389100,42389173-42389268,42389363-42389404,
           42389498-42389608,42392258-42392440,42392518-42392961
          Length = 407

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 242 D*RGSEIWLGLECRSRAYRCLQVKINRNFTPCLSLXSYAQLFKISQNFTL 93
           D  G+ +W G + +     C+    N N   C SL +  Q+ + S N T+
Sbjct: 15  DGNGTNMWTGQKDKLALDPCVSGDTNENAHACTSLTAVHQVLEESTNNTV 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,166
Number of Sequences: 37544
Number of extensions: 197210
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)