Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2347
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    27   8.3  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    27   8.3  
U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41556-5|AAK39193.1|  212|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41264-3|AAA82423.1|  574|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical
           protein M28.7 protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 277 RAAGSTLLAENRRRXSFQYVPQPVQNWTRIICNTHYT*ASELHVW 411
           R AG+ L+ +NR   S +++  P+ +    +C+ H      L +W
Sbjct: 545 RRAGTILIRDNRNPLSAEFISDPLLSVFPFVCDQHDIMDIMLKIW 589


>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 150 VPIFNXVRTTIQNFPKFHVRNETKISVFVFQLEIKRDTISK 28
           +P+     TTI ++P ++ RNET+ +++  ++    D + K
Sbjct: 294 MPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLK 334


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 150 VPIFNXVRTTIQNFPKFHVRNETKISVFVFQLEIKRDTISK 28
           +P+     TTI ++P ++ RNET+ +++  ++    D + K
Sbjct: 294 MPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLK 334


>U41556-6|AAP68953.1|  248|Caenorhabditis elegans Hypothetical
           protein C25B8.4b protein.
          Length = 248

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 328 QYVPQPVQNWTRIICNTHYT*ASELHVWNNN--VNPVRLS 441
           ++ PQ    W  ++  TH+  + +  +W     VNP RL+
Sbjct: 143 EHFPQTGYTWIGLVRFTHFEKSQDAPIWQTEGAVNPTRLN 182


>U41556-5|AAK39193.1|  212|Caenorhabditis elegans Hypothetical
           protein C25B8.4a protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 328 QYVPQPVQNWTRIICNTHYT*ASELHVWNNN--VNPVRLS 441
           ++ PQ    W  ++  TH+  + +  +W     VNP RL+
Sbjct: 107 EHFPQTGYTWIGLVRFTHFEKSQDAPIWQTEGAVNPTRLN 146


>U41264-3|AAA82423.1|  574|Caenorhabditis elegans Hypothetical
           protein F10E7.9 protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +2

Query: 206 ILXRARFLTLVSHLCASITLLWGTEQLVLPCLPKIGDEXLFNMYHNRFKI--GLASSVTL 379
           IL    F   V+H  A I L W   ++   C P I    L +M+   F     L S  T 
Sbjct: 475 ILLLIHFWFAVAHFVALIALYWYIGRVCPTCGPGISTFSLCHMFKTVFSSLDSLRSGATT 534

Query: 380 IILELANFMYGIT 418
           I+ E   F  G++
Sbjct: 535 ILPE-TTFTSGVS 546


>AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical
           protein Y102A5D.1 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 13  RRIDHFGYGISLYFKLKDKDRNLSFISNVKFWEI 114
           RRI    +G + + +L+D  RNLS I N    ++
Sbjct: 157 RRIYRSNFGYNCFSRLRDVIRNLSVIGNAPLHKV 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,623,844
Number of Sequences: 27780
Number of extensions: 184305
Number of successful extensions: 379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)